(Q46327807)

English

Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation

scientific article published on 4 August 2006

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation (English)

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

author name string

Rajnish Khanna

1

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Yu Shen

2

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Gabriela Toledo-Ortiz

3

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Elise A Kikis

4

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Henrik Johannesson

5

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Yong-Sic Hwang

6

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

Peter H Quail

7

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

publication date

4 August 2006

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

18

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

9

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

2157-2171

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

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ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY.

1 reference

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Metabolic functions of duplicate genes in Saccharomyces cerevisiae

1 reference

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29 September 2018

FHL is required for full phytochrome A signaling and shares overlapping functions with FHY1.

1 reference

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Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis

1 reference

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Dude, where's my phenotype? Dealing with redundancy in signaling networks

1 reference

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Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis

1 reference

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Induction of protein secretory pathway is required for systemic acquired resistance

1 reference

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Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans

1 reference

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29 September 2018

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.

1 reference

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29 September 2018

Light signal transduction in higher plants

1 reference

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29 September 2018

The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development

1 reference

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29 September 2018

Bioconductor: open software development for computational biology and bioinformatics

1 reference

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29 September 2018

Establishing gene function by mutagenesis in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Systematic genome-wide screens of gene function

1 reference

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29 September 2018

The red side of photomorphogenesis

1 reference

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29 September 2018

Light signals, phytochromes and cross-talk with other environmental cues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Gating of the rapid shade-avoidance response by the circadian clock in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

A growth regulatory loop that provides homeostasis to phytochrome a signaling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

EARLY FLOWERING 4Functions in Phytochrome B-Regulated Seedling De-Etiolation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Arabidopsis PSEUDO-RESPONSE REGULATOR7 Is a Signaling Intermediate in Phytochrome-Regulated Seedling Deetiolation and Phasing of the Circadian Clock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Light perception and signalling in higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

The Arabidopsis basic/helix-loop-helix transcription factor family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Genome-wide insertional mutagenesis of Arabidopsis thaliana

1 reference

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29 September 2018

Genome-wide RNAi screening in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Dissecting the phytochrome A-dependent signaling network in higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Early light-induced proteins protect Arabidopsis from photooxidative stress

1 reference

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29 September 2018

RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance.

1 reference

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29 September 2018

Functional profiling of the Saccharomyces cerevisiae genome

1 reference

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29 September 2018

Photosensory perception and signalling in plant cells: new paradigms?

1 reference

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29 September 2018

Phytochrome photosensory signalling networks

1 reference

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29 September 2018

Photocontrol of stem growth.

1 reference

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29 September 2018

A fast neutron deletion mutagenesis-based reverse genetics system for plants.

1 reference

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29 September 2018

Multiple transcription-factor genes are early targets of phytochrome A signaling

1 reference

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29 September 2018

Direct targeting of light signals to a promoter element-bound transcription factor.

1 reference

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29 September 2018

Light: an indicator of time and place.

1 reference

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29 September 2018

T-DNA as an insertional mutagen in Arabidopsis

1 reference

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29 September 2018

Sequential and coordinated action of phytochromes A and B during Arabidopsis stem growth revealed by kinetic analysis

1 reference

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29 September 2018

Function search in a large transcription factor gene family in Arabidopsis: assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes.

1 reference

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29 September 2018

PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

SPA1, a WD-repeat protein specific to phytochrome A signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.

1 reference

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29 September 2018

Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana.

1 reference

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29 September 2018

Phytochromes and photomorphogenesis in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

The phytochrome family: dissection of functional roles and signalling pathways among family members

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development

1 reference

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29 September 2018

The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

SPA1: a new genetic locus involved in phytochrome A-specific signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Light control of plant development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

The HAT4 gene of Arabidopsis encodes a developmental regulator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Phytochromes: photosensory perception and signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

29 September 2018

Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1560915

1 December 2018

Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Overexpression of Phytochrome B Induces a Short Hypocotyl Phenotype in Transgenic Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the function of two circadian-regulated CONSTANS-LIKE genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phytochrome E influences internode elongation and flowering time in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16891401

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.106.042200

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

21 December 2017

http://europepmc.org/abstract/MED/16891401

ResearchGate publication ID

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