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Cytosine modifications in neurodevelopment and diseases
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scholarly article
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stated in
PubMed
title
Cytosine modifications in neurodevelopment and diseases
(English)
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stated in
PubMed
main subject
5-formylcytosine
1 reference
stated in
ChEBI release 2020-05-28
ChEBI ID
76794
cytosine
0 references
author name string
Bing Yao
series ordinal
1
1 reference
stated in
Crossref
Peng Jin
series ordinal
2
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stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
February 2014
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stated in
PubMed
published in
Cellular and Molecular Life Sciences
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stated in
PubMed
volume
71
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stated in
PubMed
issue
3
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stated in
PubMed
page(s)
405-18
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PubMed
cites work
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Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice
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Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
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Covalent modification of DNA regulates memory formation
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Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
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MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin
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DNA methylation landscapes: provocative insights from epigenomics
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Reversal of neurological defects in a mouse model of Rett syndrome
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Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation
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Chromatin modification and epigenetic reprogramming in mammalian development
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The DNA methyltransferases of mammals
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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming
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Ascorbate induces ten-eleven translocation (Tet) methylcytosine dioxygenase-mediated generation of 5-hydroxymethylcytosine
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(R)-2-hydroxyglutarate is sufficient to promote leukemogenesis and its effects are reversible
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Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development
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28 September 2017
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.
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28 September 2017
Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma
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28 September 2017
Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2
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28 September 2017
Epigenetic mechanisms in neurological disease
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28 September 2017
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.
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28 September 2017
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28 September 2017
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28 September 2017
Mutations in DNMT1 cause autosomal dominant cerebellar ataxia, deafness and narcolepsy
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
DNA methylation: TET proteins-guardians of CpG islands?
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
TET family proteins and their role in stem cell differentiation and transformation.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
The role of MeCP2 in the brain.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
The discovery of 5-formylcytosine in embryonic stem cell DNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Mutations in ZBTB24 are associated with immunodeficiency, centromeric instability, and facial anomalies syndrome type 2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Repeat expansion disease: progress and puzzles in disease pathogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Autism and other neuropsychiatric symptoms are prevalent in individuals with MeCP2 duplication syndrome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Epigenetic mechanisms in neurological diseases: genes, syndromes, and therapies
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
Epigenetics: definition, mechanisms and clinical perspective.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
DNA methylation and methyl-CpG binding proteins: developmental requirements and function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Mouse models of MeCP2 disorders share gene expression changes in the cerebellum and hypothalamus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
DNA methylation in development and human disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Proteins that bind methylated DNA and human cancer: reading the wrong words
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Severe congenital encephalopathy caused by MECP2 null mutations in males: central hypoxia and reduced neuronal dendritic structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
DNA methyltransferase 3B (DNMT3B) mutations in ICF syndrome lead to altered epigenetic modifications and aberrant expression of genes regulating development, neurogenesis and immune function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Epigenetics: a historical overview
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Conditional Dnmt1 deletion in dorsal forebrain disrupts development of somatosensory barrel cortex and thalamocortical long-term potentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Pur alpha binds to rCGG repeats and modulates repeat-mediated neurodegeneration in a Drosophila model of fragile X tremor/ataxia syndrome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Partial rescue of MeCP2 deficiency by postnatal activation of MeCP2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Generation of neuronal variability and complexity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Diseases of unstable repeat expansion: mechanisms and common principles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 September 2017
The contribution of <i>cis</i>-elements to disease-associated repeat instability: clinical and experimental evidence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
The bases of the nucleic acids of some bacterial and animal viruses: the occurrence of 5-hydroxymethylcytosine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Local DNA demethylation in vertebrates: how could it be performed and targeted?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Active demethylation of the paternal genome in the mouse zygote
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Aberrant CpG-island methylation has non-random and tumour-type-specific patterns.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
The X-linked methylated DNA binding protein, Mecp2, is subject to X inactivation in the mouse
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
28 September 2017
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
31 May 2018
Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
31 May 2018
Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
31 May 2018
O-GLcNAc post-translational modifications regulate the entry of neurons into an axon branching program
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
retrieved
31 May 2018
Instability of a 550-base pair DNA segment and abnormal methylation in fragile X syndrome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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31 May 2018
DNA Ticketing Theory of Memory
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
Quantification of the sixth DNA base hydroxymethylcytosine in the brain
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
Expression of DNA methyltransferase gene in mature and immature neurons as well as proliferating cells in mice.
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
DNA methylation controls the timing of astrogliogenesis through regulation of JAK-STAT signaling.
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
A novel deletion in ZBTB24 in a Lebanese family with immunodeficiency, centromeric instability, and facial anomalies syndrome type 2.
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
DNMT3A mutations in acute myeloid leukemia: stability during disease evolution and clinical implications.
1 reference
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Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
RNA-binding proteins hnRNP A2/B1 and CUGBP1 suppress fragile X CGG premutation repeat-induced neurodegeneration in a Drosophila model of FXTAS.
1 reference
stated in
Crossref
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21 January 2018
Ablation of de novo DNA methyltransferase Dnmt3a in the nervous system leads to neuromuscular defects and shortened lifespan
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 November 2018
Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 November 2018
Cooperating gene mutations in childhood acute myeloid leukemia with special reference on mutations of ASXL1, TET2, IDH1, IDH2, and DNMT3A.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3870031
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28 November 2018
Demethylation of the zygotic paternal genome
1 reference
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Crossref
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https://api.crossref.org/works/10.1007%2FS00018-013-1433-Y
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21 January 2018
DNA methylation inhibits transcription indirectly via a methyl-CpG binding protein
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/23912899
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mitochondria and the death of oocytes
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23912899
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The fundamental role of epigenetic events in cancer
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23912899
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1007/S00018-013-1433-Y
0 references
Dimensions Publication ID
1025673067
0 references
PMC publication ID
3870031
1 reference
stated in
PubMed
PubMed publication ID
23912899
1 reference
stated in
PubMed
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