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Chromatin features and the epigenetic regulation of pluripotency states in ESCs
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PubMed
title
Chromatin features and the epigenetic regulation of pluripotency states in ESCs
(English)
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stated in
PubMed
main subject
pluripotency
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inferred from title
author name string
W.-W. Tee
series ordinal
1
1 reference
stated in
Crossref
D. Reinberg
series ordinal
2
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stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
June 2014
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stated in
PubMed
published in
Development
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stated in
PubMed
volume
141
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stated in
PubMed
issue
12
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stated in
PubMed
page(s)
2376-90
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stated in
PubMed
cites work
A double take on bivalent promoters
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Multiplex genome engineering using CRISPR/Cas systems
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PubMed Central
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21 March 2017
Pioneer transcription factors: establishing competence for gene expression
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21 March 2017
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
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21 March 2017
The transcriptional foundation of pluripotency
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21 March 2017
Metastable pluripotent states in NOD-mouse-derived ESCs
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21 March 2017
The growth factor environment defines distinct pluripotent ground states in novel blastocyst-derived stem cells
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21 March 2017
Analysis of human histone H2AZ deposition in vivo argues against its direct role in epigenetic templating mechanisms
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21 March 2017
Expression patterns and post-translational modifications associated with mammalian histone H3 variants
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21 March 2017
Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation
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21 March 2017
Crystal structure of the nucleosome core particle at 2.8 A resolution
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21 March 2017
Histone methylation by PRC2 is inhibited by active chromatin marks
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21 March 2017
Crystal structure of a nucleosome core particle containing the variant histone H2A.Z
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21 March 2017
Chromatin modifications and their function
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21 March 2017
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
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21 March 2017
Embryonic stem cell lines derived from human blastocysts
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21 March 2017
Establishment in culture of pluripotential cells from mouse embryos
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21 March 2017
Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome
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21 March 2017
Genome-wide nucleosome positioning during embryonic stem cell development
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21 March 2017
Distinct factors control histone variant H3.3 localization at specific genomic regions
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21 March 2017
Histone variants--ancient wrap artists of the epigenome
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21 March 2017
Histone modifications at human enhancers reflect global cell-type-specific gene expression
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21 March 2017
ChIP-seq accurately predicts tissue-specific activity of enhancers
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21 March 2017
The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities
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21 March 2017
Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B
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21 March 2017
Epiblast stem cell-based system reveals reprogramming synergy of germline factors
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21 March 2017
Promotion of reprogramming to ground state pluripotency by signal inhibition
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21 March 2017
Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells
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The NuRD component Mbd3 is required for pluripotency of embryonic stem cells
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21 March 2017
Citrullination regulates pluripotency and histone H1 binding to chromatin
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21 March 2017
Super-enhancers in the control of cell identity and disease
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21 March 2017
Prdm14 promotes germline fate and naive pluripotency by repressing FGF signalling and DNA methylation
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21 March 2017
The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation
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21 March 2017
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
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21 March 2017
Master transcription factors determine cell-type-specific responses to TGF-β signaling
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Oct4 kinetics predict cell lineage patterning in the early mammalian embryo
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21 March 2017
Polycomb-like 2 associates with PRC2 and regulates transcriptional networks during mouse embryonic stem cell self-renewal and differentiation
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21 March 2017
Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells
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21 March 2017
Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development
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21 March 2017
Occupying Chromatin: Polycomb Mechanisms for Getting to Genomic Targets, Stopping Transcriptional Traffic, and Staying Put
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7 April 2017
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
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One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
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7 April 2017
The ground state of embryonic stem cell self-renewal
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7 April 2017
How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers
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7 April 2017
Master transcription factors and mediator establish super-enhancers at key cell identity genes
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7 April 2017
Control of the embryonic stem cell state
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7 April 2017
A unique chromatin signature uncovers early developmental enhancers in humans
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7 April 2017
Histones: annotating chromatin
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7 April 2017
Nanog safeguards pluripotency and mediates germline development
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7 April 2017
Derivation of pluripotent epiblast stem cells from mammalian embryos
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7 April 2017
New cell lines from mouse epiblast share defining features with human embryonic stem cells
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7 April 2017
Chromatin signatures of pluripotent cell lines
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7 April 2017
Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells.
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7 April 2017
The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly
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7 April 2017
Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons
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9 May 2017
MBD3/NuRD facilitates induction of pluripotency in a context-dependent manner
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28 September 2017
Erk1/2 activity promotes chromatin features and RNAPII phosphorylation at developmental promoters in mouse ESCs
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28 September 2017
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
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28 September 2017
Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.
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28 September 2017
A high-resolution map of the three-dimensional chromatin interactome in human cells
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28 September 2017
PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.
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28 September 2017
Histone H3K27 trimethylation inhibits H3 binding and function of SET1-like H3K4 methyltransferase complexes
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28 September 2017
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28 September 2017
Promiscuous RNA binding by Polycomb repressive complex 2.
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28 September 2017
Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells
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28 September 2017
H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.
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28 September 2017
Deterministic direct reprogramming of somatic cells to pluripotency
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28 September 2017
Locus-specific editing of histone modifications at endogenous enhancers
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28 September 2017
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
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28 September 2017
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites
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28 September 2017
The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells
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28 September 2017
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
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28 September 2017
Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells
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28 September 2017
Hypoxia induces re-entry of committed cells into pluripotency
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28 September 2017
H3.3-H4 tetramer splitting events feature cell-type specific enhancers
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28 September 2017
Totipotent embryonic stem cells arise in ground-state culture conditions.
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28 September 2017
Bivalent chromatin marks developmental regulatory genes in the mouse embryonic germline in vivo
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28 September 2017
Stem cell metabolism in tissue development and aging
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28 September 2017
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
BAF complexes facilitate decatenation of DNA by topoisomerase IIα
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
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PubMed Central
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28 September 2017
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Reduced Oct4 expression directs a robust pluripotent state with distinct signaling activity and increased enhancer occupancy by Oct4 and Nanog
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Emerging roles for chromatin as a signal integration and storage platform
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PubMed Central
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28 September 2017
A localized Wnt signal orients asymmetric stem cell division in vitro
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PubMed Central
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28 September 2017
Modification of enhancer chromatin: what, how, and why?
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PubMed Central
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28 September 2017
Naive pluripotency is associated with global DNA hypomethylation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Genome-wide chromatin state transitions associated with developmental and environmental cues
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PubMed Central
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28 September 2017
H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome
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28 September 2017
Influence of threonine metabolism on S-adenosylmethionine and histone methylation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions
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PubMed Central
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28 September 2017
Asymmetrically modified nucleosomes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Histone H2A variants in nucleosomes and chromatin: more or less stable?
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PubMed Central
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28 September 2017
Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase
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PubMed Central
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28 September 2017
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
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PubMed Central
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28 September 2017
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
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PubMed Central
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28 September 2017
NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
The transcriptional and epigenomic foundations of ground state pluripotency.
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28 September 2017
H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
A unique regulatory phase of DNA methylation in the early mammalian embryo
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PubMed Central
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28 September 2017
Chromatin-modifying enzymes as modulators of reprogramming
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PubMed Central
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28 September 2017
Ascorbic acid prevents loss of Dlk1-Dio3 imprinting and facilitates generation of all-iPS cell mice from terminally differentiated B cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Parallel mechanisms of epigenetic reprogramming in the germline
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Replication-coupled chromatin assembly generates a neuronal bilateral asymmetry in C. elegans
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Polycomb-repressed genes have permissive enhancers that initiate reprogramming
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Sequentially acting Sox transcription factors in neural lineage development
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Rapid and efficient reprogramming of somatic cells to induced pluripotent stem cells by retinoic acid receptor gamma and liver receptor homolog 1.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
esBAF facilitates pluripotency by conditioning the genome for LIF/STAT3 signalling and by regulating polycomb function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
The transcriptional and signalling networks of pluripotency
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Constitutive heterochromatin reorganization during somatic cell reprogramming
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
H3K36 methylation antagonizes PRC2-mediated H3K27 methylation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Splitting of H3-H4 tetramers at transcriptionally active genes undergoing dynamic histone exchange
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
PCL2 modulates gene regulatory networks controlling self-renewal and commitment in embryonic stem cells
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Open chromatin in pluripotency and reprogramming
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
LIF-independent JAK signalling to chromatin in embryonic stem cells uncovered from an adult stem cell disease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Direct conversion of C. elegans germ cells into specific neuron types.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Reduced levels of two modifiers of epigenetic gene silencing, Dnmt3a and Trim28, cause increased phenotypic noise
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Pluripotency and cellular reprogramming: facts, hypotheses, unresolved issues
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
H2A.Z nucleosomes enriched over active genes are homotypic
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Induced pluripotency: history, mechanisms, and applications
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
The role of FGF/Erk signaling in pluripotent cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
ESCs require PRC2 to direct the successful reprogramming of differentiated cells toward pluripotency
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
A murine ESC-like state facilitates transgenesis and homologous recombination in human pluripotent stem cells.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Extrinsic regulation of pluripotent stem cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Embryonic germ cells from mice and rats exhibit properties consistent with a generic pluripotent ground state.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Epigenetic stability increases extensively during Drosophila follicle stem cell differentiation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Nucleosome dynamics define transcriptional enhancers
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Variability in gene expression underlies incomplete penetrance
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Non-genetic heterogeneity of cells in development: more than just noise
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
High throughput characterization of combinatorial histone codes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
A parallel circuit of LIF signalling pathways maintains pluripotency of mouse ES cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Distinctive chromatin in human sperm packages genes for embryo development
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Validated germline-competent embryonic stem cell lines from nonobese diabetic mice
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Klf4 reverts developmentally programmed restriction of ground state pluripotency
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Germline competent embryonic stem cells derived from rat blastocysts
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Capture of authentic embryonic stem cells from rat blastocysts
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Global transcription in pluripotent embryonic stem cells.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
The role of oxygen availability in embryonic development and stem cell function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Identification and characterization of subpopulations in undifferentiated ES cell culture
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Nucleosome destabilization in the epigenetic regulation of gene expression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
Nucleosome stability mediated by histone variants H3.3 and H2A.Z.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
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28 September 2017
HIF-2alpha regulates Oct-4: effects of hypoxia on stem cell function, embryonic development, and tumor growth.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Cell type regulates selective segregation of mouse chromosome 7 DNA strands in mitosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Low O2 tensions and the prevention of differentiation of hES cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Reactivation of the paternal X chromosome in early mouse embryos
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Histone H3.3 is enriched in covalent modifications associated with active chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Epigenetic dynamics of imprinted X inactivation during early mouse development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Normal spermatogenesis in mice lacking the testis-specific linker histone H1t.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Messenger RNAs encoding mouse histone macroH2A1 isoforms are expressed at similar levels in male and female cells and result from alternative splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 September 2017
Vitamin C modulates TET1 function during somatic cell reprogramming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Removal of Polycomb repressive complex 2 makes C. elegans germ cells susceptible to direct conversion into specific somatic cell types.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
DNA and chromatin modification networks distinguish stem cell pluripotent ground states.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Dynamics and memory of heterochromatin in living cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
The histone demethylases Jhdm1a/1b enhance somatic cell reprogramming in a vitamin-C-dependent manner.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Global epigenetic changes during somatic cell reprogramming to iPS cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Vitamin C enhances the generation of mouse and human induced pluripotent stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Generation of pluripotent stem cells from neonatal mouse testis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
31 May 2018
Mll2 is required for H3K4 trimethylation on bivalent promoters in embryonic stem cells, whereas Mll1 is redundant.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Derivation of novel human ground state naive pluripotent stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Gene regulation and priming by topoisomerase IIα in embryonic stem cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Modeling human disease with pluripotent stem cells: from genome association to function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Genome-wide kinase-chromatin interactions reveal the regulatory network of ERK signaling in human embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
A sporadic super state
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
A subpopulation of adult skeletal muscle stem cells retains all template DNA strands after cell division.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Transposable elements have rewired the core regulatory network of human embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
The Role of Exogenous Fibroblast Growth Factor-2 on the Reprogramming of Primordial Germ Cells into Pluripotent Stem Cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Stem cells, asymmetric division and cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4050692
retrieved
28 November 2018
Hypoxia enhances the generation of induced pluripotent stem cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24917497
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Different flavors of pluripotency, molecular mechanisms, and practical implications
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24917497
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A chromatin-modifying function of JNK during stem cell differentiation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24917497
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
MBD3/NuRD Facilitates Induction of Pluripotency in a Context-Dependent Manner
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24917497
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The role of hypoxia in the maintenance of hematopoietic stem cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24917497
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1242/DEV.096982
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1724176
Fatcat ID
release_zpgqsbui6zh2tnsg5fccs2l2jm
0 references
OpenCitations bibliographic resource ID
1724176
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1724176
PMC publication ID
4050692
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1724176
PubMed publication ID
24917497
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1724176
ResearchGate publication ID
264636628
0 references
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