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The unexpected traits associated with core promoter elements
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title
The unexpected traits associated with core promoter elements
(English)
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author name string
Rivka Dikstein
series ordinal
1
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language of work or name
English
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publication date
2011
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Transcription
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volume
2
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PubMed
page(s)
201-6
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PubMed
issue
5
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PubMed
cites work
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The new core promoter element XCPE1 (X Core Promoter Element 1) directs activator-, mediator-, and TATA-binding protein-dependent but TFIID-independent RNA polymerase II transcription from TATA-less promoters
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Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters
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Computational analysis of core promoters in the Drosophila genome
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DNA binding site selection by RNA polymerase II TAFs: a TAF(II)250-TAF(II)150 complex recognizes the initiator
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New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB
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Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
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Genome-wide analysis of mammalian promoter architecture and evolution
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Noise in eukaryotic gene expression
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Regulation of noise in the expression of a single gene
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7 April 2017
TAFs mediate transcriptional activation and promoter selectivity
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7 April 2017
The "initiator" as a transcription control element
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7 April 2017
Unique translation initiation of mRNAs-containing TISU element
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28 September 2017
The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery
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28 September 2017
Three key subregions contribute to the function of the downstream RNA polymerase II core promoter
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PubMed Central
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28 September 2017
TAF4/4b x TAF12 displays a unique mode of DNA binding and is required for core promoter function of a subset of genes
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28 September 2017
Characterization of sINR, a strict version of the Initiator core promoter element
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28 September 2017
Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements
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28 September 2017
Elongation dynamics shape bursty transcription and translation
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28 September 2017
Caudal, a key developmental regulator, is a DPE-specific transcriptional factor
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28 September 2017
A translation initiation element specific to mRNAs with very short 5'UTR that also regulates transcription
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28 September 2017
Links between core promoter and basic gene features influence gene expression
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PubMed Central
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28 September 2017
Interplay between E-box and NF-kappaB in regulation of A20 gene by DRB sensitivity-inducing factor (DSIF).
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28 September 2017
Noise in gene expression determines cell fate in Bacillus subtilis
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28 September 2017
Genetic properties influencing the evolvability of gene expression
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PubMed Central
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28 September 2017
Differential regulation of NF-kappaB by elongation factors is determined by core promoter type
1 reference
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PubMed Central
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28 September 2017
Mammalian RNA polymerase II core promoters: insights from genome-wide studies
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3265775
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28 September 2017
Phenotypic consequences of promoter-mediated transcriptional noise
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PubMed Central
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28 September 2017
Perspectives on the RNA polymerase II core promoter.
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PubMed Central
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28 September 2017
Mice and men: their promoter properties
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PubMed Central
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28 September 2017
A core promoter element downstream of the TATA box that is recognized by TFIIB.
1 reference
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PubMed Central
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28 September 2017
Enhancement of cellular memory by reducing stochastic transitions
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28 September 2017
The glucocorticoid receptor blocks P-TEFb recruitment by NFkappaB to effect promoter-specific transcriptional repression.
1 reference
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PubMed Central
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28 September 2017
Synergy of human Pol II core promoter elements revealed by statistical sequence analysis
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28 September 2017
Clustering of DNA sequences in human promoters
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PubMed Central
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28 September 2017
The MTE, a new core promoter element for transcription by RNA polymerase II.
1 reference
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PubMed Central
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28 September 2017
Elongation inhibition by DRB sensitivity-inducing factor is regulated by the A20 promoter via a novel negative element and NF-kappaB.
1 reference
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PubMed Central
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28 September 2017
The 5' terminal oligopyrimidine tract of human elongation factor 1A-1 gene functions as a transcriptional initiator and produces a variable number of Us at the transcriptional level
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PubMed Central
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28 September 2017
Mechanism of rapid transcriptional induction of tumor necrosis factor alpha-responsive genes by NF-kappaB.
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28 September 2017
Core promoters: active contributors to combinatorial gene regulation
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PubMed Central
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28 September 2017
Synthesis of the translational apparatus is regulated at the translational level
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PubMed Central
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28 September 2017
The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box.
1 reference
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PubMed Central
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28 September 2017
The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila
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PubMed Central
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28 September 2017
Transcription reinitiation rate: a special role for the TATA box.
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28 September 2017
A conserved downstream element defines a new class of RNA polymerase II promoters
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28 September 2017
The human immunodeficiency virus type 1 long terminal repeat specifies two different transcription complexes, only one of which is regulated by Tat
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PubMed Central
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28 September 2017
Vertebrate mRNAs with a 5'-terminal pyrimidine tract are candidates for translational repression in quiescent cells: characterization of the translational cis-regulatory element.
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28 September 2017
Direct recognition of initiator elements by a component of the transcription factor IID complex
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28 September 2017
Functional dissection of a mouse ribosomal protein promoter: significance of the polypyrimidine initiator and an element in the TATA-box region
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28 September 2017
Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro
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28 September 2017
Holo-TFIID supports transcriptional stimulation by diverse activators and from a TATA-less promoter
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28 September 2017
The Organization of the Histone Genes in Drosophila melanogaster: Functional and Evolutionary Implications
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28 September 2017
Gene expression variations are predictive for stochastic noise
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31 May 2018
Functional characterization of core promoter elements: the downstream core element is recognized by TAF1.
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31 May 2018
NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II.
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31 May 2018
TFIID sequence recognition of the initiator and sequences farther downstream in Drosophila class II genes.
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31 May 2018
A downstream initiation element required for efficient TATA box binding and in vitro function of TFIID.
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31 May 2018
Interaction of a gene-specific transcription factor with the adenovirus major late promoter upstream of the TATA box region.
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19 June 2018
Identification and distinct regulation of yeast TATA box-containing genes.
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Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast
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21 January 2018
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.
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Transcriptional elongation by RNA polymerase II is stimulated by transactivators.
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based on heuristic
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A TATA-like sequence located downstream of the transcription initiation site is required for expression of an RNA polymerase II transcribed gene
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Mechanism of assembly of the RNA polymerase II preinitiation complex. Transcription factors delta and epsilon promote stable binding of the transcription apparatus to the initiator element
1 reference
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12 December 2020
based on heuristic
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Initiator sequences direct downstream promoter binding by human transcription factor IID
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12 December 2020
based on heuristic
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Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II
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12 December 2020
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A genetic signature of interspecies variations in gene expression
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12 December 2020
based on heuristic
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Promoter influences transcription elongation: TATA-box element mediates the assembly of processive transcription complexes responsive to cyclin-dependent kinase 9
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12 December 2020
based on heuristic
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12 December 2020
based on heuristic
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Responses of four yeast genes to changes in the transcriptional machinery are determined by their promoters
1 reference
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12 December 2020
based on heuristic
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Identifiers
DOI
10.4161/TRNS.2.5.17271
0 references
PMCID
3265775
1 reference
stated in
PubMed
PubMed ID
22231114
1 reference
stated in
PubMed
ResearchGate publication ID
221734644
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