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Trendspotting in the Protein Data Bank
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scholarly article
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PubMed
review article
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Europe PubMed Central
title
Trendspotting in the Protein Data Bank
(English)
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main subject
Protein Data Bank
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author
Helen M. Berman
series ordinal
1
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Andreas Prlić
series ordinal
9
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Christine Zardecki
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14
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Shuchismita Dutta
series ordinal
4
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Ezra Peisach
object named as
Ezra Peisach
series ordinal
8
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Peter W. Rose
object named as
Peter W. Rose
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10
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Jasmine Young
object named as
Jasmine Young
series ordinal
13
0 references
Chenghua Shao
series ordinal
11
object named as
Chenghua Shao
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Luigi Di Costanzo
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3
object named as
Luigi Di Costanzo
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Huanwang Yang
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12
object named as
Huanwang Yang
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stated in
Crossref
Sutapa Ghosh
series ordinal
5
object named as
Sutapa Ghosh
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Crossref
Buvaneswari Coimbatore Narayanan
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2
object named as
Buvaneswari Coimbatore Narayanan
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author name string
Brian P. Hudson
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6
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stated in
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Catherine L. Lawson
series ordinal
7
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stated in
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language of work or name
English
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stated in
PubMed
publication date
17 April 2013
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stated in
PubMed
published in
FEBS Letters
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stated in
PubMed
volume
587
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PubMed
issue
8
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PubMed
page(s)
1036-45
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PubMed
cites work
A new generation of crystallographic validation tools for the protein data bank
1 reference
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PubMed Central
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21 March 2017
EMDataBank.org: unified data resource for CryoEM
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21 March 2017
Remediation of the protein data bank archive
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
The Protein Data Bank
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21 March 2017
Structure of a B-DNA dodecamer: conformation and dynamics
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21 March 2017
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21 March 2017
Room temperature femtosecond X-ray diffraction of photosystem II microcrystals
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21 March 2017
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
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21 March 2017
Structure of a 16-nm cage designed by using protein oligomers
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21 March 2017
Chemical engineering of Mycobacterium tuberculosis dodecin hybrids
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21 March 2017
Construction and crystal structure of recombinant STNV capsids
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PubMed Central
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21 March 2017
Structures of Cytochrome P450 2B4 Complexed with the Antiplatelet Drugs Ticlopidine and Clopidogrel,
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PubMed Central
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21 March 2017
Crystal Structures of a Group II Chaperonin Reveal the Open and Closed States Associated with the Protein Folding Cycle
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PubMed Central
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21 March 2017
Improving diffraction by humidity control: a novel device compatible with X-ray beamlines
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PubMed Central
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21 March 2017
Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
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21 March 2017
Directing noble metal ion chemistry within a designed ferritin protein
1 reference
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PubMed Central
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21 March 2017
Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site
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PubMed Central
reference URL
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21 March 2017
The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
Structure of human chitotriosidase. Implications for specific inhibitor design and function of mammalian chitinase-like lectins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
Structural mechanism for statin inhibition of HMG-CoA reductase
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
The three-dimensional structure of the 4:1 mithramycin:d(ACCCGGGT)(2) complex: evidence for an interaction between the E saccharides
1 reference
stated in
PubMed Central
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21 March 2017
Crystal structure of a hepatitis delta virus ribozyme
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PubMed Central
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21 March 2017
Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution
1 reference
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PubMed Central
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21 March 2017
Interaction of a legume lectin with two components of the bacterial cell wall. A crystallographic study
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PubMed Central
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21 March 2017
Three-dimensional structure of a hammerhead ribozyme
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PubMed Central
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21 March 2017
Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5 A resolution
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PubMed Central
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21 March 2017
Structure of tomato bushy stunt virus. V. Coat protein sequence determination and its structural implications
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PubMed Central
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21 March 2017
Recognition of a DNA operator by the repressor of phage 434: a view at high resolution
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PubMed Central
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21 March 2017
The use of molecular-replacement phases for the refinement of the human rhinovirus 14 structure
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PubMed Central
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21 March 2017
Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus
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PubMed Central
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21 March 2017
Novel binding mode of highly potent HIV-proteinase inhibitors incorporating the (R)-hydroxyethylamine isostere
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PubMed Central
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21 March 2017
Molecular structure of a left-handed double helical DNA fragment at atomic resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
Further refinement of the structure of yeast tRNAPhe
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
Announcing the worldwide Protein Data Bank
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
Outcome of the first electron microscopy validation task force meeting
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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21 March 2017
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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28 September 2017
Creating a community resource for protein science
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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28 September 2017
The Protein Structure Initiative: achievements and visions for the future
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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28 September 2017
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4068610
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28 September 2017
Near-atomic-resolution cryo-EM for molecular virology
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28 September 2017
Atomic resolution cryo electron microscopy of macromolecular complexes
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28 September 2017
Representation of viruses in the remediated PDB archive
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28 September 2017
BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions
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28 September 2017
The PDB format, mmCIF, and other data formats
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28 September 2017
Structural biology of viruses by the combination of electron cryomicroscopy and X-ray crystallography
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28 September 2017
Ab initio phase determination and phase extension using non-crystallographic symmetry
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28 September 2017
The General Structure of Transfer RNA Molecules
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28 September 2017
Atomic co-ordinates for yeast phenylalanine tRNA.
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28 September 2017
Notes of a protein crystallographer: on the high-resolution structure of the PDB growth rate.
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28 November 2018
PDBe: Protein Data Bank in Europe
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28 November 2018
The Protein Data Bank: a historical perspective.
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28 November 2018
Deposition of Macromolecular Structures
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12 December 2020
based on heuristic
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Crystal Structures of Actinomycin D and Actinomycin Z3
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based on heuristic
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Identifiers
DOI
10.1016/J.FEBSLET.2012.12.029
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PMC publication ID
4068610
1 reference
stated in
PubMed
PubMed publication ID
23337870
1 reference
stated in
PubMed
ResearchGate publication ID
248393213
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