(Q26865772)

T. Deva

series ordinal

2

1 reference

language of work or name

1 reference

September 2011

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Briefings in Bioinformatics

published in

1 reference

volume

12

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issue

5

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page(s)

530-44

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Pathguide: a pathway resource list

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Pathways for aberrant angiogenesis in pancreatic cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Disruption of auxin transport is associated with aberrant leaf development in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Who's your neighbor? New computational approaches for functional genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Methods for the inference of biological pathways and networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Detection of activity centers in cellular pathways using transcript profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Illuminating drug discovery with biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Target-oriented and diversity-oriented organic synthesis in drug discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Reengineering orthogonally selective riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

AraCyc: a biochemical pathway database for Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Targeting the human cancer pathway protein interaction network by structural genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Gramene: a growing plant comparative genomics resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

TRANSFAC: transcriptional regulation, from patterns to profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PlantTFDB: a comprehensive plant transcription factor database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The IntAct molecular interaction database in 2010

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

STRING 8--a global view on proteins and their functional interactions in 630 organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

SPIKE--a database, visualization and analysis tool of cellular signaling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

DRASTIC--INSIGHTS: querying information in a plant gene expression database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

STIFDB-Arabidopsis Stress Responsive Transcription Factor DataBase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PathoPlant: a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Mitogen-activated protein kinase signaling in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Glutamate-receptor genes in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Overexpression of the AtGluR2 gene encoding an Arabidopsis homolog of mammalian glutamate receptors impairs calcium utilization and sensitivity to ionic stress in transgenic plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The putative glutamate receptor 1.1 (AtGLR1.1) functions as a regulator of carbon and nitrogen metabolism in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The putative glutamate receptor 1.1 (AtGLR1.1) in Arabidopsis thaliana regulates abscisic acid biosynthesis and signaling to control development and water loss

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Arabidopsis mutants resistant to S(+)-beta-methyl-alpha, beta-diaminopropionic acid, a cycad-derived glutamate receptor agonist.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Sugar signalling and antioxidant network connections in plant cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Light signal transduction: an infinite spectrum of possibilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Top hits in contemporary JAZ: an update on jasmonate signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MetNetGE: interactive views of biological networks and ontologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Visualization of omics data for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Tools for visually exploring biological networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Pathway information for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PAX of mind for pathway researchers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

CellML: its future, present and past

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Design and implementation of microarray gene expression markup language (MAGE-ML)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MetNetAPI: A flexible method to access and manipulate biological network data from MetNet

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

KEGG for representation and analysis of molecular networks involving diseases and drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Data integration for plant genomics--exemplars from the integration of Arabidopsis thaliana databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Hormone (dis)harmony moulds plant health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Meta-analysis approach identifies candidate genes and associated molecular networks for type-2 diabetes mellitus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Reactome knowledgebase of human biological pathways and processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Hepatitis C virus infection protein network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

BIND: the Biomolecular Interaction Network Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

BioGRID: a general repository for interaction datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MINT: the Molecular INTeraction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Evolution of web services in bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Arabidopsis reactome: a foundation knowledgebase for plant systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

CORNET: a user-friendly tool for data mining and integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Gene expression omnibus: microarray data storage, submission, retrieval, and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The Plant Ontology Consortium and plant ontologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The MGED Ontology: a resource for semantics-based description of microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

A predicted interactome for Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

SUBA: the Arabidopsis Subcellular Database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Extensive feature detection of N-terminal protein sorting signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Mimicking cellular sorting improves prediction of subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

In silico prediction of the peroxisomal proteome in fungi, plants and animals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Locating proteins in the cell using TargetP, SignalP and related tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

WoLF PSORT: protein localization predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Machine learning approaches for the prediction of signal peptides and other protein sorting signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Properties and prediction of mitochondrial transit peptides from Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Advances in the prediction of protein targeting signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Combining machine learning and homology-based approaches to accurately predict subcellular localization in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PPDB, the Plant Proteomics Database at Cornell

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

plprot: a comprehensive proteome database for different plastid types.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

ChEBI: a database and ontology for chemical entities of biological interest

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PubChem: a public information system for analyzing bioactivities of small molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Internet resources integrating many small-molecule databases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

PathwayAccess: CellDesigner plugins for pathway databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

VitisNet: "Omics" integration through grapevine molecular networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

MetaCrop: a detailed database of crop plant metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The aMAZE LightBench: a web interface to a relational database of cellular processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

From molecular activities and processes to biological function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Sentra: a database of signal transduction proteins for comparative genome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

The metabolic pathway collection from EMP: the enzymes and metabolic pathways database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Addressing the problems with life-science databases for traditional uses and systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ083

21 January 2018

Identifiers

DOI

10.1093/BIB/BBQ083

0 references

DBLP publication ID

journals/bib/SucaetD11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PubMed publication ID

21949268

1 reference