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Higher order chromatin organization in cancer
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PubMed
review article
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Europe PubMed Central
title
Higher order chromatin organization in cancer
(English)
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author name string
Karen L. Reddy
series ordinal
1
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Crossref
Andrew P. Feinberg
series ordinal
2
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Crossref
language of work or name
English
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PubMed
publication date
April 2013
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PubMed
published in
Seminars in Cancer Biology
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PubMed
volume
23
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PubMed
issue
2
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PubMed
page(s)
109-15
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PubMed
cites work
Human DNA methylomes at base resolution show widespread epigenomic differences
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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21 March 2017
Intra-individual change over time in DNA methylation with familial clustering
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PubMed Central
reference URL
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21 March 2017
Condensed mitotic chromatin is accessible to transcription factors and chromatin structural proteins
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PubMed Central
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21 March 2017
Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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21 March 2017
Accumulation of mutant lamin A causes progressive changes in nuclear architecture in Hutchinson-Gilford progeria syndrome
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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21 March 2017
Dynamic associations of heterochromatin protein 1 with the nuclear envelope
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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21 March 2017
Asi1 is an inner nuclear membrane protein that restricts promoter access of two latent transcription factors
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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21 March 2017
Transcriptional repressor germ cell-less (GCL) and barrier to autointegration factor (BAF) compete for binding to emerin in vitro
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PubMed Central
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21 March 2017
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
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PubMed Central
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21 March 2017
Detection of in vivo protein-DNA interactions using DamID in mammalian cells
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PubMed Central
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21 March 2017
DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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21 March 2017
Ageing-related chromatin defects through loss of the NURD complex
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PubMed Central
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21 March 2017
Spatial partitioning of the regulatory landscape of the X-inactivation centre
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PubMed Central
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7 April 2017
Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
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PubMed Central
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28 September 2017
Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Oncogene-mediated alterations in chromatin conformation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Regulating the levels of key factors in cell cycle and DNA repair: new pathways revealed by lamins.
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PubMed Central
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28 September 2017
The nucleoskeleton as a genome-associated dynamic 'network of networks'.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition
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PubMed Central
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28 September 2017
Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells
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PubMed Central
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28 September 2017
Nurturing the genome: A-type lamins preserve genomic stability
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PubMed Central
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28 September 2017
Higher-order genome organization in human disease
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Integrating one-dimensional and three-dimensional maps of genomes
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PubMed Central
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28 September 2017
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.
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PubMed Central
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28 September 2017
The spatial dynamics of tissue-specific promoters during C. elegans development
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PubMed Central
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28 September 2017
Ageing and cancer as diseases of epigenesis
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Porin new light onto chromatin and nuclear organization
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
An emerin "proteome": purification of distinct emerin-containing complexes from HeLa cells suggests molecular basis for diverse roles including gene regulation, mRNA splicing, signaling, mechanosensing, and nuclear architecture.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
The nuclear envelope, a key structure in cellular integrity and gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Active genes at the nuclear pore complex.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Epigenetic disruption of ribosomal RNA genes and nucleolar architecture in DNA methyltransferase 1 (Dnmt1) deficient cells
1 reference
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PubMed Central
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28 September 2017
Rise, fall and resurrection of chromosome territories: a historical perspective. Part II. Fall and resurrection of chromosome territories during the 1950s to 1980s. Part III. Chromosome territories and the functional nuclear architecture: experiment
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28 September 2017
Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks.
1 reference
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PubMed Central
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28 September 2017
Rise, fall and resurrection of chromosome territories: a historical perspective. Part I. The rise of chromosome territories.
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PubMed Central
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28 September 2017
Distinct structural and mechanical properties of the nuclear lamina in Hutchinson-Gilford progeria syndrome
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Characterization of the TCL-1 transgenic mouse as a preclinical drug development tool for human chronic lymphocytic leukemia
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PubMed Central
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28 September 2017
Nuclear envelope proteins and chromatin arrangement: a pathogenic mechanism for laminopathies.
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PubMed Central
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28 September 2017
Chromatin architecture
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3715089
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28 September 2017
Regulation of interleukin 7-dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5.
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28 September 2017
Nuclear envelopathies--raising the nuclear veil
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28 September 2017
Chromatin organization in the mammalian nucleus
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PubMed Central
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28 September 2017
Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques.
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28 September 2017
Nuclear structure in cancer cells
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PubMed Central
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28 September 2017
Mechanisms regulating the expression, self-maintenance, and signaling-function of the bradykinin B2 and B1 receptors.
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28 September 2017
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
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PubMed Central
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28 September 2017
Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture
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PubMed Central
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28 September 2017
Differences in the localization and morphology of chromosomes in the human nucleus.
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PubMed Central
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28 September 2017
Bioproduction of human enzymes in transgenic tobacco
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PubMed Central
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28 September 2017
The architectural organization of nuclear metabolism
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28 September 2017
Increased methylation variation in epigenetic domains across cancer types
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PubMed Central
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31 May 2018
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
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PubMed Central
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31 May 2018
Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells
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PubMed Central
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31 May 2018
Initiation of allelic exclusion by stochastic interaction of Tcrb alleles with repressive nuclear compartments
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31 May 2018
Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.
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28 November 2018
Loss of lamin A/C expression in stage II and III colon cancer is associated with disease recurrence
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28 November 2018
The spatial repositioning of adipogenesis genes is correlated with their expression status in a porcine mesenchymal stem cell adipogenesis model system
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28 November 2018
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
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28 November 2018
Nuclear architecture--an island no more
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28 November 2018
Inactivation of the lamin A/C gene by CpG island promoter hypermethylation in hematologic malignancies, and its association with poor survival in nodal diffuse large B-cell lymphoma.
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28 November 2018
Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes
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Repression of nuclear lamin A and C gene expression in human acute lymphoblastic leukemia and non-Hodgkin's lymphoma cells
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Identifiers
DOI
10.1016/J.SEMCANCER.2012.12.001
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PMC publication ID
3715089
1 reference
stated in
PubMed
PubMed publication ID
23266653
1 reference
stated in
PubMed
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