(Q27319083)

26 June 2017

title

IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data (English)

1 reference

26 June 2017

1 reference

1 reference

Jeroen Raes

3

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author name string

Mohamed Mysara

series ordinal

1

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26 June 2017

Natalie Leys

series ordinal

2

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26 June 2017

Pieter Monsieurs

series ordinal

4

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26 June 2017

language of work or name

English

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publication date

29 April 2016

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26 June 2017

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26 June 2017

volume

17

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26 June 2017

issue

1

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26 June 2017

page(s)

192

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Removing noise from pyrosequenced amplicons

26 June 2017

cites work

1 reference

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QIIME allows analysis of high-throughput community sequencing data

21 March 2017

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 March 2017

1 reference

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Accurate whole human genome sequencing using reversible terminator chemistry

21 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Basic local alignment search tool

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

UPARSE: highly accurate OTU sequences from microbial amplicon reads

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

FLASH: fast length adjustment of short reads to improve genome assemblies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

7 April 2017

https://api.crossref.org/works/10.1186%2FS12859-016-1061-2

Error filtering, pair assembly and error correction for next-generation sequencing reads

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Discovering motifs that induce sequencing errors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Performance comparison of benchtop high-throughput sequencing platforms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

PANDAseq: paired-end assembler for illumina sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Sequence-specific error profile of Illumina sequencers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Probabilistic base calling of Solexa sequencing data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Microbial population structures in the deep marine biosphere

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850673

Fast, accurate error-correction of amplicon pyrosequences using Acacia.

31 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-016-1061-2

10.1186/S12859-016-1061-2

21 January 2018

Identifiers

DOI

1 reference

journals/bmcbi/MysaraLRM16

26 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1045704420

0 references

OpenCitations bibliographic resource ID

1985943

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1985943

1 reference