(Q27339851)

English

Characterization of the core rumen microbiome in cattle during transition from forage to concentrate as well as during and after an acidotic challenge

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scholarly article

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Characterization of the core rumen microbiome in cattle during transition from forage to concentrate as well as during and after an acidotic challenge (English)

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object named as

Renee M Petri

1

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Tim A. McAllister

object named as

Tim A McAllister

7

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author name string

Tyler Schwaiger

2

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Greg B Penner

3

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Karen A Beauchemin

4

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Robert J Forster

5

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John J McKinnon

6

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language of work or name

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publication date

2013

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8

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12

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e83424

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copyright license

Creative Commons Attribution 4.0 International

31 December 2013

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April 2022 Public Data File from Crossref

copyright status

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Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

21 March 2017

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

21 March 2017

A core gut microbiome in obese and lean twins

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

21 March 2017

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

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21 March 2017

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

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21 March 2017

An obesity-associated gut microbiome with increased capacity for energy harvest

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21 March 2017

A new mathematical model for relative quantification in real-time RT-PCR

1 reference

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21 March 2017

Towards the human intestinal microbiota phylogenetic core

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21 March 2017

UCHIME improves sensitivity and speed of chimera detection

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7 April 2017

Bacterial community variation in human body habitats across space and time

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7 April 2017

The human microbiome project

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7 April 2017

Ecological and evolutionary forces shaping microbial diversity in the human intestine

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7 April 2017

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

7 April 2017

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

7 April 2017

Changes in the rumen epimural bacterial diversity of beef cattle as affected by diet and induced ruminal acidosis.

1 reference

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29 September 2017

Composition and similarity of bovine rumen microbiota across individual animals

1 reference

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29 September 2017

Perturbation dynamics of the rumen microbiota in response to exogenous butyrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during the transition to a high-grain diet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Microbiome analysis of dairy cows fed pasture or total mixed ration diets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Gut microbiome-host interactions in health and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Rumen microbial population dynamics during adaptation to a high-grain diet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

1 reference

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29 September 2017

Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP).

1 reference

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29 September 2017

Importance of microbial colonization of the gut in early life to the development of immunity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Acidosis in feedlot cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Atopostipes suicloacale gen. nov., sp. nov., isolated from an underground swine manure storage pit.

1 reference

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Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: antibiotics, probiotics, and prebiotics

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Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches.

1 reference

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29 September 2017

Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

How many ruminal bacteria are there?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

Microbial attachment and feed digestion in the rumen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3877040

29 September 2017

An evaluation of the accuracy and precision of a stand-alone submersible continuous ruminal pH measurement system.

1 reference

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21 January 2018

Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR.

1 reference

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Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens

1 reference

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Population structure of rumen Escherichia coli associated with subacute ruminal acidosis (SARA) in dairy cattle.

1 reference

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21 January 2018

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools.

1 reference

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21 January 2018

An independent microbial flora of the epithelium and its role in the ecomicrobiology of the rumen

1 reference

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21 January 2018

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbiological and physiological changes associated with acute indigestion in sheep

1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

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based on heuristic

inferred from PubMed ID database lookup

A freeze-squeeze method for recovering long DNA from agarose gels

1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Individual animal variability in ruminal bacterial communities and ruminal acidosis in primiparous Holstein cows during the periparturient period

1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

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based on heuristic

inferred from PubMed ID database lookup

Isolation of high-quality total RNA from rumen anaerobic bacteria and fungi, and subsequent detection of glycoside hydrolases

1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

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based on heuristic

inferred from PubMed ID database lookup

Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers

1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PCR-DGGE analysis reveals a distinct diversity in the bacterial population attached to the rumen epithelium

1 reference

https://pubmed.ncbi.nlm.nih.gov/24391765

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0083424

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2013PLoSO...883424P

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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