(Q27639600)

ORCID Public Data File 2021

Olli T Pentikäinen

7

object named as

Olli Pentikäinen

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author name string

Yvonne Nymalm

1

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Zinaida Kravchuk

2

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Alexander A Chumanevich

4

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Anatoly P Dubnovitsky

5

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Jussi Kankare

6

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Jukka Lehtonen

8

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Paolo Arosio

9

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Sergey Martsev

10

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Mark S Johnson

Journal of Structural Biology

11

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publication date

June 2002

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published in

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volume

138

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issue

3

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page(s)

171-86

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cites work

Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Standard conformations for the canonical structures of immunoglobulins

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

A mutational analysis of the epitopes of recombinant human H-ferritin

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

ALSCRIPT: a tool to format multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Bound water molecules and conformational stabilization help mediate an antigen-antibody association

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Single-chain antigen-binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Stabilization of a recombinant Fv fragment by base-loop interconnection and V(H)-V(L) permutation.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

New applications of simulated annealing in X-ray crystallography and solution NMR.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Crystallographic R factor refinement by molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Canonical structures for the hypervariable regions of immunoglobulins

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Development of an immunoassay for all human isoferritins, and its application to serum ferritin evaluation

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Single antibody domains as small recognition units: design and in vitro antigen selection of camelized, human VH domains with improved protein stability

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Comparison of the fine specificity of anti-dinitrophenyl-combining site composed of either VL dimer or VL and VH of protein 315.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

A comparison of strategies to stabilize immunoglobulin Fv-fragments

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Destabilizing loop swaps in the CDRs of an immunoglobulin VL domain

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Comparison of the three-dimensional structures of recombinant human H and horse L ferritins at high resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

2.0 A structure of indole-3-glycerol phosphate synthase from the hyperthermophile Sulfolobus solfataricus: possible determinants of protein stability

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

The three-dimensional structure of a T-cell antigen receptor V alpha V beta heterodimer reveals a novel arrangement of the V beta domain

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

A role for destabilizing amino acid replacements in light-chain amyloidosis

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Protein engineering of antibody binding sites: recovery of specific activity in an anti-digoxin single-chain Fv analogue produced in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Discrimination of common protein folds: application of protein structure to sequence/structure comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

A Structural Basis for Sequence Comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Replacing the complementarity-determining regions in a human antibody with those from a mouse

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

The crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic bacterium Thermotoga maritima at 2.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Two high-affinity monoclonal IgG2a antibodies with differing thermodynamic stability demonstrate distinct antigen-induced changes in protein A-binding affinity

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Orientation of antigen binding sites in dimeric and trimeric single chain Fv antibody fragments

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Immunochemical characterization of human liver and heart ferritins with monoclonal antibodies.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Antiferritin single-chain Fv fragment is a functional protein with properties of a partially structured state: comparison with the completely folded V(L) domain.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Antiferritin single-chain antibody: a functional protein with incomplete folding?

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Modification of monoclonal and polyclonal IgG with palladium (II) coproporphyrin I: stimulatory and inhibitory functional effects induced by two different methods

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Solvent content of protein crystals

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Raster3D: photorealistic molecular graphics

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Conformations of the third hypervariable region in the VH domain of immunoglobulins

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Electrostatic fields in antibodies and antibody/antigen complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Automated classification of antibody complementarity determining region 3 of the heavy chain (H3) loops into canonical forms and its application to protein structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Binding of protein to polystyrene in solid-phase immuno assays

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Reengineering immunoglobulin domain interactions by introduction of charged residues

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Improved Fourier coefficients for maps using phases from partial structures with errors

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Chemical and biological evolution of nucleotide-binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

An unusual route to thermostability disclosed by the comparison of Thermus thermophilus and Escherichia coli inorganic pyrophosphatases

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Binding of 2,4-dinitrophenyl derivatives by the light chain dimer obtained from immunoglobulin A produced by MOPC-315 mouse myeloma

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

H3-rules: identification of CDR-H3 structures in antibodies

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Assembly of a functional immunoglobulin Fv fragment in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Light chain of natural antibody plays a dominant role in protein antigen binding

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Major antigen-induced domain rearrangements in an antibody

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

A diffusion limited reaction theory for a microtiter plate assay

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Bence Jones proteins: a powerful tool for the fundamental study of protein chemistry and pathophysiology

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Binding activities of a repertoire of single immunoglobulin variable domains secreted from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Antibody-antigen interactions: new structures and new conformational changes

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Protein thermal stability, hydrogen bonds, and ion pairs

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

Parameter relation rows: a query system for protein structure function relationships

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021

The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures

1 reference

https://api.crossref.org/works/10.1016%2FS1047-8477%2802%2900015-1

7 January 2021