(Q27640131)

English

Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations

scientific article

In more languages

Statements

scholarly article

0 references

Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations (English)

0 references

Gérard Bricogne

8

0 references

Clemens Vonrhein

7

0 references

9

0 references

author name string

Pascal Retailleau

1

0 references

Xin Huang

2

0 references

Yuhui Yin

3

0 references

Mei Hu

4

0 references

Violetta Weinreb

5

0 references

Patrice Vachette

6

0 references

Valentin Ilyin

10

0 references

Charles W Carter

11

0 references

language of work or name

0 references

publication date

3 January 2003

0 references

Journal of Molecular Biology

0 references

325

0 references

1

0 references

39-63

0 references

Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

An operational RNA code for amino acids and possible relationship to genetic code

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Correlating amino acid conservation with function in tyrosyl-tRNA synthetase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Tryptophanyl-tRNA synthetase crystal structure reveals an unexpected homology to tyrosyl-tRNA synthetase.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

A structure-based multiple sequence alignment of all class I aminoacyl-tRNA synthetases

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Mutation of lysine 233 to alanine introduces positive cooperativity into tyrosyl-tRNA synthetase.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Mutational and kinetic analysis of a mobile loop in tyrosyl-tRNA synthetase.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Analysis of the role of the KMSKS loop in the catalytic mechanism of the tyrosyl-tRNA synthetase using multimutant cycles

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

2.9 Å crystal structure of ligand-free tryptophanyl-tRNA synthetase: Domain movements fragment the adenine nucleotide binding site

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

High-resolution experimental phases for tryptophanyl-tRNA synthetase (TrpRS) complexed with tryptophanyl-5′AMP

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Binding energy and catalysis: a lesson from protein engineering of the tyrosyl-tRNA synthetase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Structure-activity relationships in engineered proteins: analysis of use of binding energy by linear free energy relationships

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Dissection of the structure and activity of the tyrosyl-tRNA synthetase by site-directed mutagenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: a mobile loop envelopes the transition state in an induced-fit mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Quantitative analysis of crystal growth. Tryptophanyl-tRNA synthetase crystal polymorphism and its relationship to catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Quantitative analysis in the characterization and optimization of protein crystal growth.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Kinetic and thermodynamic properties of wild-type and engineered mutants of tyrosyl-tRNA synthetase analyzed by pyrophosphate-exchange kinetics

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Crystals of Bacillus stearothermophilus tryptophanyl-tRNA synthetase containing enzymatically formed acyl transfer product tryptophanyl-ATP, an active site maker for the 3' CCA terminus of tryptophanyl-tRNATrp

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Asymmetry of tyrosyl-tRNA synthetase in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Tyrosyl-tRNA synthetase acts as an asymmetric dimer in charging tRNA. A rationale for half-of-the-sites activity

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Ligand binding and enzymic catalysis coupled through subunits in tyrosyl-tRNA synthetase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

A concerted tryptophanyl-adenylate-dependent conformational change in Bacillus subtilis tryptophanyl-tRNA synthetase revealed by the fluorescence of Trp92.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Escherichia coli tryptophanyl-tRNA synthetase mutants selected for tryptophan auxotrophy implicate the dimer interface in optimizing amino acid binding

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Anticodon and acceptor stem nucleotides in tRNAGln are major recognition elements for E. coli glutaminyl-tRNA synthetase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Switching tRNA(Gln) identity from glutamine to tryptophan

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

L-arginine recognition by yeast arginyl-tRNA synthetase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

How glutaminyl-tRNA synthetase selects glutamine

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Ancient adaptation of the active site of tryptophanyl-tRNA synthetase for tryptophan binding.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Hydrogen bonding and biological specificity analysed by protein engineering

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Role of the TIGN sequence in E. coli tryptophanyl-tRNA synthetase.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Structure and Activity of the Tyrosyl-tRNA Synthetase: The Hydrogen Bond in Catalysis and Specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

tRNA aminoacylation by arginyl-tRNA synthetase: induced conformations during substrates binding

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Crystal structure of aspartyl-tRNA synthetase from Pyrococcus kodakaraensis KOD: archaeon specificity and catalytic mechanism of adenylate formation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

How methionyl-tRNA synthetase creates its amino acid recognition pocket upon L-methionine binding

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Structural studies of lysyl-tRNA synthetase: conformational changes induced by substrate binding

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Physiological concentrations of purines and pyrimidines

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Hydrophobic bonding and accessible surface area in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Enzymatic transition-state analysis and transition-state analogs

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Energetics of substrate binding, catalysis, and product release

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Characterization of the transition-state structure of the reaction of kanamycin nucleotidyltransferase by heavy-atom kinetic isotope effects

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

ES/IS: estimation of conformational free energy by combining dynamics simulations with explicit solvent with an implicit solvent continuum model.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Free energies of protein decoys provide insight into determinants of protein stability

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Three conformational states of scallop myosin S1

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Allosteric enzymes as models for chemomechanical energy transducing assemblies.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

On the treatment of negative intensity observations

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

[33] AMoRe: An automated molecular replacement program package

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Methods used in the structure determination of bovine mitochondrial F1 ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Improved Fourier coefficients for maps using phases from partial structures with errors

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

xdlMAPMAN and xdlDATAMAN - programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Crystallographic refinement by simulated annealing: methods and applications

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Modelling prior distributions of atoms for macromolecular refinement and completion.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

The Na+ binding site of thrombin

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

An extensively modified version of MolScript that includes greatly enhanced coloring capabilities

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Raster3D Version 2.0. A program for photorealistic molecular graphics

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

On the rate law and mechanism of the adenosine triphosphate--pyrophosphate isotope exchange reaction of amino acyl transfer ribonucleic acid synthetases.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901156-7

7 January 2021

Identifiers

10.1016/S0022-2836(02)01156-7

0 references

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q27640131&oldid=1953653481"