(Q27640913)

English

Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center

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scholarly article

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Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center (English)

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structural biology

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protein structure

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5

object named as

Nick V Grishin

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author name string

Kumar Singh Saikatendu

1

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Xuejun Zhang

2

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Lisa Kinch

3

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Matthew Leybourne

4

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Hong Zhang

6

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language of work or name

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publication date

23 December 2006

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BMC Structural Biology

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6

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1

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27

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1 reference

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20 March 2017

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20 March 2017

Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site

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20 March 2017

Profile-profile comparisons by COMPASS predict intricate homologies between protein families

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20 March 2017

The evolutionarily conserved trimeric structure of CutA1 proteins suggests a role in signal transduction

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20 March 2017

Crystal structure of ATP phosphoribosyltransferase from Mycobacterium tuberculosis

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20 March 2017

The crystal structures of Phascolopsis gouldii wild type and L98Y methemerythrins: structural and functional alterations of the O2 binding pocket

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20 March 2017

Crystal structure of mammalian purple acid phosphatase

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20 March 2017

GlnK, a PII-homologue: structure reveals ATP binding site and indicates how the T-loops may be involved in molecular recognition

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20 March 2017

Toroidal structure of lambda-exonuclease

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20 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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20 March 2017

Structure of the Escherichia coli signal transducing protein PII

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20 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

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20 March 2017

The CCP4 suite: programs for protein crystallography

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20 March 2017

Maximum-likelihood density modification

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20 March 2017

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20 March 2017

Automated protein model building combined with iterative structure refinement

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20 March 2017

Automated MAD and MIR structure solution

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20 March 2017

Preparation of selenomethionyl proteins for phase determination

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20 March 2017

Protein structure comparison by alignment of distance matrices

1 reference

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20 March 2017

The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

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20 March 2017

The role of transcriptional corepressor Nif3l1 in early stage of neural differentiation via cooperation with Trip15/CSN2

1 reference

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20 March 2017

Communication modules in bacterial signaling proteins

2 references

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20 March 2017

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7 April 2017

Over 1000 genes are involved in the DNA damage response of Escherichia coli

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20 March 2017

Isolation and characterization of a novel human gene, NIF3L1, and its mouse ortholog, Nif3l1, highly conserved from bacteria to mammals

1 reference

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20 March 2017

SCOP database in 2004: refinements integrate structure and sequence family data

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7 April 2017

3D-Jury: a simple approach to improve protein structure predictions

1 reference

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7 April 2017

Hidden Markov models

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7 April 2017

'Conserved hypothetical' proteins: prioritization of targets for experimental study

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29 September 2017

Detection of reliable and unexpected protein fold predictions using 3D-Jury

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29 September 2017

A tale of toroids in DNA metabolism.

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29 September 2017

P(II) signal transduction proteins, pivotal players in microbial nitrogen control

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779786

29 September 2017

PII signal transduction proteins

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779786

29 September 2017

The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons.

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29 September 2017

Phosphorylation of the PII protein (glnB gene product) in the cyanobacterium Synechococcus sp. strain PCC 7942: analysis of in vitro kinase activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779786

29 September 2017

Modulation of glutamine synthetase adenylylation and deadenylylation is mediated by metabolic transformation of the P II -regulatory protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779786

29 September 2017

Regulation of glutamine synthetase adenylylation and deadenylylation by the enzymatic uridylylation and deuridylylation of the PII regulatory protein.

1 reference

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2 June 2018

Crystal structural studies of changes in the native dinuclear iron center of ribonucleotide reductase protein R2 from mouse

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27 November 2018

Transcriptional activation by yeast PDR1p is inhibited by its association with NGG1p/ADA3p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779786

27 November 2018

Structure prediction meta server

1 reference

https://pubmed.ncbi.nlm.nih.gov/17187687

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity

1 reference

https://pubmed.ncbi.nlm.nih.gov/17187687

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phase combination and cross validation in iterated density-modification calculations

1 reference

https://pubmed.ncbi.nlm.nih.gov/17187687

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/17187687

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1472-6807-6-27

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PubMed publication ID

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