(Q27641503)

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Unique stabilizing interactions identified in the two-stranded α-helical coiled-coil: Crystal structure of a cortexillin I/GCN4 hybrid coiled-coil peptide

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scholarly article

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Unique stabilizing interactions identified in the two-stranded α-helical coiled-coil: Crystal structure of a cortexillin I/GCN4 hybrid coiled-coil peptide (English)

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crystal structure

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author name string

Darin L Lee

1

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Sergei Ivaninskii

2

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Peter Burkhard

3

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Robert S Hodges

4

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publication date

July 2003

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Protein Science

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12

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7

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1395-405

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Improving coiled-coil stability by optimizing ionic interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

Buried polar residues in coiled-coil interfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

Design of a minimal protein oligomerization domain by a structural approach

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

The coiled-coil trigger site of the rod domain of cortexillin I unveils a distinct network of interhelical and intrahelical salt bridges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

High-resolution protein design with backbone freedom

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

A helix propensity scale based on experimental studies of peptides and proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

Structural basis of amino acid alpha helix propensity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

Predicting coiled coils from protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

20 March 2017

Coiled coils: new structures and new functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

7 April 2017

Coiled coils: a highly versatile protein folding motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

7 April 2017

The penultimate rotamer library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

7 April 2017

MultiCoil: a program for predicting two- and three-stranded coiled coils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

7 April 2017

Predicting coiled coils by use of pairwise residue correlations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

7 April 2017

Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

7 April 2017

Comparison of in vivo selection and rational design of heterodimeric coiled coils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

An intrahelical salt bridge within the trigger site stabilizes the GCN4 leucine zipper

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

Coiled-coil trigger motifs in the 1B and 2B rod domain segments are required for the stability of keratin intermediate filaments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

Helical peptide and protein design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

A distinct 14 residue site triggers coiled-coil formation in cortexillin I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

A direct comparison of helix propensity in proteins and peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

29 September 2017

Sticky-end assembly of a designed peptide fiber provides insight into protein fibrillogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

2 June 2018

The role of position a in determining the stability and oligomerization state of alpha-helical coiled coils: 20 amino acid stability coefficients in the hydrophobic core of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

2 June 2018

Alpha-helical protein assembly motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

2 June 2018

Capping and alpha-helix stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

2 June 2018

AMoRe: an automated package for molecular replacement

1 reference

https://api.crossref.org/works/10.1110%2FPS.0241403

21 January 2018

Automated design of specificity in molecular recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: amino acids I, V, L, N, A, and K.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Designing heterodimeric two-stranded alpha-helical coiled-coils. Effects of hydrophobicity and alpha-helical propensity on protein folding, stability, and specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Salt bridges destabilize a leucine zipper designed for maximized ion pairing between helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Design and characterization of a heterodimeric coiled coil that forms exclusively with an antiparallel relative helix orientation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

LearnCoil-VMF: computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Inter-helical interactions in the leucine zipper coiled coil dimer: pH and salt dependence of coupling energy between charged amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

An iterative method for improved protein structural motif recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Protein destabilization by electrostatic repulsions in the two-stranded alpha-helical coiled-coil/leucine zipper

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323925

27 November 2018

Synthesis of a model protein of defined secondary and quaternary structure. Effect of chain length on the stabilization and formation of two-stranded alpha-helical coiled-coils

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Context is a major determinant of β-sheet propensity

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synthesis and properties of the peptide corresponding to the mutant form of the leucine zipper of the transcriptional activator GCN4 from yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The net energetic contribution of interhelical electrostatic attractions to coiled-coil stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship of sidechain hydrophobicity and alpha-helical propensity on the stability of the single-stranded amphipathic alpha-helix

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Orientation, positional, additivity, and oligomerization-state effects of interhelical ion pairs in alpha-helical coiled-coils

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

De novo design of a model peptide sequence to examine the effects of single amino acid substitutions in the hydrophobic core on both stability and oligomerization state of coiled-coils

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydrophilic interaction/cation-exchange chromatography for the purification of synthetic peptides from closely related impurities: serine side-chain acetylated peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A distinct seven-residue trigger sequence is indispensable for proper coiled-coil formation of the human macrophage scavenger receptor oligomerization domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The contribution of buried polar groups to the conformational stability of the GCN4 coiled coil

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Are trigger sequences essential in the folding of two-stranded alpha-helical coiled-coils?

1 reference

https://pubmed.ncbi.nlm.nih.gov/12824486

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.0241403

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