(Q27642404)

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High-resolution crystal structures of ribonuclease A complexed with adenylic and uridylic nucleotide inhibitors. Implications for structure-based design of ribonucleolytic inhibitors

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scholarly article

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High-resolution crystal structures of ribonuclease A complexed with adenylic and uridylic nucleotide inhibitors. Implications for structure-based design of ribonucleolytic inhibitors (English)

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crystal structure

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Evangelia Chrysina

4

object named as

Evangelia D Chrysina

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Demetres D. Leonidas

object named as

Demetres D Leonidas

1

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author name string

Gayatri B Chavali

2

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Nikos G Oikonomakos

3

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Magda N Kosmopoulou

5

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Metaxia Vlassi

6

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Claire Frankling

7

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K Ravi Acharya

8

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publication date

November 2003

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Protein Science

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12

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11

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2559-74

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The crystal structure of eosinophil cationic protein in complex with 2',5'-ADP at 2.0 A resolution reveals the details of the ribonucleolytic active site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Atomic resolution (0.98 A) structure of eosinophil-derived neurotoxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Atomic resolution structures of ribonuclease A at six pH values

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Cleavage of 3',5'-pyrophosphate-linked dinucleotides by ribonuclease A and angiogenin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Binding of phosphate and pyrophosphate ions at the active site of human angiogenin as revealed by X-ray crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Mapping the ribonucleolytic active site of eosinophil-derived neurotoxin (EDN). High resolution crystal structures of EDN complexes with adenylic nucleotide inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Crystal structure of eosinophil cationic protein at 2.4 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Toward rational design of ribonuclease inhibitors: high-resolution crystal structure of a ribonuclease A complex with a potent 3',5'-pyrophosphate-linked dinucleotide inhibitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Coulombic effects of remote subsites on the active site of ribonuclease A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Crystal structures of ribonuclease A complexes with 5'-diphosphoadenosine 3'-phosphate and 5'-diphosphoadenosine 2'-phosphate at 1.7 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Ionic interactions in crystalline bovine pancreatic ribonuclease A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Crystal structure of ribonuclease A.d(ApTpApApG) complex. Direct evidence for extended substrate recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Site-directed mutagenesis of histidine-13 and histidine-114 of human angiogenin. Alanine derivatives inhibit angiogenin-induced angiogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Raster3D: photorealistic molecular graphics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

An extensively modified version of MolScript that includes greatly enhanced coloring capabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Satisfying hydrogen bonding potential in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

20 March 2017

Evolution of antiviral activity in the ribonuclease A gene superfamily: evidence for a specific interaction between eosinophil-derived neurotoxin (EDN/RNase 2) and respiratory syncytial virus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

24 May 2017

Small molecule inhibitors of RNase A and related enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

Protein titration in the crystal state.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

Three-dimensional structure of the complexes of ribonuclease A with 2',5'-CpA and 3',5'-d(CpA) in aqueous solution, as obtained by NMR and restrained molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

A study into the effects of protein binding on nucleotide conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

The structures of RNase A complexed with 3'-CMP and d(CpA): active site conformation and conserved water molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

Crystal structure of RNase A complexed with d(pA)4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

The eosinophilic leukocyte: structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

Role of lysines in human angiogenin: chemical modification and site-directed mutagenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

29 September 2017

Expression and characterization of recombinant human eosinophil-derived neurotoxin and eosinophil-derived neurotoxin-anti-transferrin receptor sFv.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

2 June 2018

X-ray structure of a ribonuclease A-uridine vanadate complex at 1.3 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

27 November 2018

Structure of the crystalline complex of cytidylic acid (2'-CMP) with ribonuclease at 1.6 A resolution. Conservation of solvent sites in RNase-A high-resolution structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

27 November 2018

Ribonuclease is partly responsible for the HIV-1 inhibitory effect activated by HLA alloantigen recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

27 November 2018

Coulombic Forces in Protein−RNA Interactions: Binding and Cleavage by Ribonuclease A and Variants at Lys7, Arg10, and Lys66†

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

27 November 2018

Recombinant human eosinophil-derived neurotoxin/RNase 2 functions as an effective antiviral agent against respiratory syncytial virus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

27 November 2018

A Residue to Residue Hydrogen Bond Mediates the Nucleotide Specificity of Ribonuclease A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2366950

27 November 2018

Potent inhibition of mammalian ribonucleases by 3', 5'-pyrophosphate-linked nucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Eosinophil-derived neurotoxin and human liver ribonuclease. Identity of structure and linkage of neurotoxicity to nuclease activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

X-ray refinement study on the binding of cytidylic acid (2′-CMP) to ribonuclease A

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and characterization of angiogenin, an angiogenic protein from human carcinoma cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binding of phosphate ligands to ribonuclease A

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Symbols for specifying the conformation of polysaccharide chains. Recommendations 1981

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The occupancy of two distinct conformations by active-site histidine-119 in crystals of ribonuclease is modulated by pH

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural Determinants of Enzymic Processivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

5'-Diphosphoadenosine 3'-phosphate is a potent inhibitor of bovine pancreatic ribonuclease A

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural features that determine the enzymatic potency and specificity of human angiogenin: threonine-80 and residues 58-70 and 116-123

1 reference

https://pubmed.ncbi.nlm.nih.gov/14573867

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.03196603

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