(Q27648800)

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The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction

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8 January 2020

The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): metal ion binding correlates with base unstacking and groove contraction (English)

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8 January 2020

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8 January 2020

author name string

Youri Timsit

1

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8 January 2020

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16 October 2007

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8 January 2020

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8 January 2020

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8 January 2020

12

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8 January 2020

2098-2107

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Europe PubMed Central

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8 January 2020

A General Strategy to Solve the Phase Problem in RNA Crystallography

1 reference

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20 March 2017

MeRNA: a database of metal ion binding sites in RNA structures

1 reference

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An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H

1 reference

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Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads: implications for specific binding in RNA tetraplexes

1 reference

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A crystallographic study of the binding of 13 metal ions to two related RNA duplexes

1 reference

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20 March 2017

A compact RNA tertiary structure contains a buried backbone-K+ complex

1 reference

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Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA

1 reference

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Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments

1 reference

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The crystal structure of the Rev binding element of HIV-1 reveals novel base pairing and conformational variability

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1 reference

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1 reference

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20 March 2017

The Protein Data Bank

1 reference

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Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

1 reference

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The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

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AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG)

1 reference

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The CCP4 suite: programs for protein crystallography

1 reference

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

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1 reference

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1 reference

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20 March 2017

Tertiary contacts distant from the active site prime a ribozyme for catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080593

20 March 2017

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

1 reference

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20 March 2017

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1 reference

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29 September 2017

The contribution of metal ions to the structural stability of the large ribosomal subunit

1 reference

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DNA and its counterions: a molecular dynamics study

1 reference

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29 September 2017

Microenvironment analysis and identification of magnesium binding sites in RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080593

29 September 2017

Metal ions in the structure and function of RNA.

1 reference

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Quantitative studies of Mn(2+)-promoted specific and non-specific cleavages of a large RNA: Mn(2+)-GAAA ribozymes and the evolution of small ribozymes

1 reference

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1 reference

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Metal-binding sites in the major groove of a large ribozyme domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080593

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A Mn2(+)-dependent ribozyme

1 reference

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A trinucleotide can promote metal ion-dependent specific cleavage of RNA

1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/17940138

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RNA shows its metal

1 reference

https://pubmed.ncbi.nlm.nih.gov/17940138

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stereochemistry of nucleic acids and their constituents. V. Crystal and molecular structure of a hydrated monosodium inosine 5'-phosphate. Commonly occurring unusual nucleotide in the anticodons of tRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17940138

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1 reference

https://pubmed.ncbi.nlm.nih.gov/17940138

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/17940138

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1261/RNA.730207

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17940138%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

1 reference

Europe PubMed Central

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8 January 2020

1 reference

Europe PubMed Central

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8 January 2020

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