(Q27648865)

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Structure and activity of Y-class DNA polymerase DPO4 from Sulfolobus solfataricus with templates containing the hydrophobic thymine analog 2,4-difluorotoluene

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scholarly article

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Structure and activity of Y-class DNA polymerase DPO4 from Sulfolobus solfataricus with templates containing the hydrophobic thymine analog 2,4-difluorotoluene (English)

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1 reference

based on heuristic

inferred from title

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Sulfolobus solfataricus

object named as

Sulfolobus solfataricus

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based on heuristic

inferred from title

5

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author name string

Adriana Irimia

1

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Robert L Eoff

2

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Pradeep S Pallan

3

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F Peter Guengerich

4

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language of work or name

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publication date

14 December 2007

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Journal of Biological Chemistry

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282

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50

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36421-33

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Active site tightness and substrate fit in DNA replication

1 reference

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Probing the active site tightness of DNA polymerase in subangstrom increments

1 reference

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DNA polymerase catalysis in the absence of Watson-Crick hydrogen bonds: analysis by single-turnover kinetics

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Functional evidence for a small and rigid active site in a high fidelity DNA polymerase: probing T7 DNA polymerase with variably sized base pairs

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Requirement of Watson-Crick hydrogen bonding for DNA synthesis by yeast DNA polymerase eta.

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Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa

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Varying DNA base-pair size in subangstrom increments: evidence for a loose, not large, active site in low-fidelity Dpo4 polymerase

1 reference

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21 January 2018

Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta

1 reference

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21 January 2018

Mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase IV.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Interactions of carcinogen-bound DNA with individual DNA polymerases

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Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication

1 reference

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Dpo4 is hindered in extending a G.T mismatch by a reverse wobble

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Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts

1 reference

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Replication of a cis-syn thymine dimer at atomic resolution

1 reference

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Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase

1 reference

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DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine.

1 reference

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21 January 2018

Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4.

1 reference

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Molecular basis of selectivity of nucleoside triphosphate incorporation opposite O6-benzylguanine by sulfolobus solfataricus DNA polymerase Dpo4: steady-state and pre-steady-state kinetics and x-ray crystallography of correct and incorrect pairing

1 reference

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Hydrogen bonding of 7,8-dihydro-8-oxodeoxyguanosine with a charged residue in the little finger domain determines miscoding events in Sulfolobus solfataricus DNA polymerase Dpo4

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

21 January 2018

The structural basis for the mutagenicity of O6-methyl-guanine lesions

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

21 January 2018

Elucidation of the initial step of oligonucleotide fragmentation in matrix-assisted laser desorption/ionization using modified nucleic acids

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

21 January 2018

The CCP4 suite: programs for protein crystallography

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Phasercrystallographic software

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

1 reference

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A thymidine triphosphate shape analog lacking Watson-Crick pairing ability is replicated with high sequence selectivity

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

21 January 2018

Gene silencing activity of siRNAs with a ribo-difluorotoluyl nucleotide

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

21 January 2018

Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Structure of DNA polymerase I Klenow fragment bound to duplex DNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

21 January 2018

Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M707267200

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Steady-state and pre-steady-state kinetic analysis of 8-oxo-7,8-dihydroguanosine triphosphate incorporation and extension by replicative and repair DNA polymerases

1 reference

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21 January 2018

Identifiers

10.1074/JBC.M707267200

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