(Q27654035)

English

Molecular Basis of Arabinobio-hydrolase Activity in Phytopathogenic Fungi: CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF FUSARIUM GRAMINEARUM GH93 EXO- -L-ARABINANASE

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Molecular Basis of Arabinobio-hydrolase Activity in Phytopathogenic Fungi: CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF FUSARIUM GRAMINEARUM GH93 EXO- -L-ARABINANASE (English)

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crystal structure

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Fusarium graminearum

object named as

FUSARIUM GRAMINEARUM

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based on heuristic

inferred from title

2

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Annabelle Varrot

7

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Raphaël Carapito

1

object named as

Raphaël Carapito

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object named as

Todd L Lowary

6

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author name string

Raphaël Carapito

1

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Jean-Marc Jeltsch

3

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Simon C Byrns

4

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Pui-Hang Tam

5

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Vincent Phalip

8

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language of work or name

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publication date

1 May 2009

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Journal of Biological Chemistry

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284

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18

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12285-96

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Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetraose reveals a different binding mechanism compared with other members of the same family

1 reference

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

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The structure of the complex between a branched pentasaccharide and Thermobacillus xylanilyticus GH-51 arabinofuranosidase reveals xylan-binding determinants and induced fit

1 reference

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Structure of the two-subsite beta-d-xylosidase from Selenomonas ruminantium in complex with 1,3-bis[tris(hydroxymethyl)methylamino]propane

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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Crystal structure and snapshots along the reaction pathway of a family 51 -L-arabinofuranosidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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Sialidase-like Asp-boxes: sequence-similar structures within different protein folds

1 reference

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Insights into ligand-induced conformational change in Cel5A from Bacillus agaradhaerens revealed by a catalytically active crystal form

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Catalysis and specificity in enzymatic glycoside hydrolysis: a 2,5B conformation for the glycosyl-enzyme intermediate revealed by the structure of the Bacillus agaradhaerens family 11 xylanase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Three-dimensional structure of a barley beta-D-glucan exohydrolase, a family 3 glycosyl hydrolase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

The three domains of a bacterial sialidase: a beta-propeller, an immunoglobulin module and a galactose-binding jelly-roll

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Automated structure solution with autoSHARP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Likelihood-enhanced fast translation functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Coot: model-building tools for molecular graphics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

The CCP4 suite: programs for protein crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Automated protein model building combined with iterative structure refinement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

ESPript: analysis of multiple sequence alignments in PostScript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Preparation of selenomethionyl proteins for phase determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Mechanisms of enzymatic glycoside hydrolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

20 March 2017

Mechanistic insights into glycosidase chemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

29 September 2017

Alpha-L-arabinofuranosidases: the potential applications in biotechnology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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Structural insight into the ligand specificity of a thermostable family 51 arabinofuranosidase, Araf51, from Clostridium thermocellum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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Crystal structure of the human cytosolic sialidase Neu2. Evidence for the dynamic nature of substrate recognition

1 reference

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Multivalency and the mode of action of bacterial sialidases

1 reference

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Hemicellulose bioconversion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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Novel sequences propel familiar folds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

29 September 2017

Arabinoxylan degradation by fungi: characterization of the arabinoxylan-arabinofuranohydrolase encoding genes from Aspergillus niger and Aspergillus tubingensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

29 September 2017

Cloning of genes encoding alpha-L-arabinofuranosidase and beta-xylosidase from Trichoderma reesei by expression in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

29 September 2017

Enzymatic degradation of cell wall and related plant polysaccharides

1 reference

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Bacterial sialidases--roles in pathogenicity and nutrition

1 reference

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Transglycosylation catalyzed by a Penicillium chrysogenum exo-1,5-alpha-L-arabinanase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2673297

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1 reference

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1 reference

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1 reference

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21 January 2018

Structural basis for thermostability of endo-1,5-alpha-L-arabinanase from Bacillus thermodenitrificans TS-3.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Molecular characterization of a Penicillium chrysogenum exo-1,5-alpha-L-arabinanase that is structurally distinct from other arabinan-degrading enzymes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Diversity of the exoproteome of Fusarium graminearum grown on plant cell wall

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Fusarium graminearum on plant cell wall: no fewer than 30 xylanase genes transcribed.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

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1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

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Arabinofuranosides from mycobacteria: synthesis of a highly branched hexasaccharide and related fragments containing beta-arabinofuranosyl residues

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Efficient hydrolysis of hemicellulose by a Fusarium graminearum xylanase blend produced at high levels in Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

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PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Mechanistic requirements for the efficient enzyme-catalyzed hydrolysis of thiosialosides.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

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1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

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1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Modeling of arabinofuranose and arabinan, II. Nmr and Conformational analysis of arabinobiose and arabinan

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Modelling of arabinofuranose and arabinan. Part 1: conformational flexibility of the arabinofuranose ring

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M900439200

21 January 2018

Synthesis of the Docosanasaccharide Arabinan Domain of Mycobacterial Arabinogalactan and a Proposed Octadecasaccharide Biosynthetic Precursor

1 reference

https://pubmed.ncbi.nlm.nih.gov/19269961

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[33] AMoRe: An automated molecular replacement program package

1 reference

https://pubmed.ncbi.nlm.nih.gov/19269961

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glycosidase families

1 reference

https://pubmed.ncbi.nlm.nih.gov/19269961

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M900439200

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