(Q27656012)

English

Crystal Structure and Biophysical Properties of Bacillus subtilis BdbD: AN OXIDIZING THIOL:DISULFIDE OXIDOREDUCTASE CONTAINING A NOVEL METAL SITE

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Crystal structure and biophysical properties of Bacillus subtilis BdbD. An oxidizing thiol:disulfide oxidoreductase containing a novel metal site (English)

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

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crystal structure

0 references

Bacillus subtilis

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Mirja Carlsson Möller

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Lars Hederstedt

6

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31 January 2020

Nick E. Le Brun

7

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31 January 2020

Geoffrey Robert Moore

5

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Geoffrey R Moore

1 reference

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31 January 2020

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Allison Lewin

2

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31 January 2020

Oliver Hecht

3

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31 January 2020

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publication date

17 June 2009

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31 January 2020

Journal of Biological Chemistry

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31 January 2020

284

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31 January 2020

35

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31 January 2020

23719-23733

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Properties of the Thioredoxin Fold Superfamily Are Modulated by a Single Amino Acid Residue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Structure and Functional Properties of Bacillus subtilis Endospore Biogenesis Factor StoA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Effects of substitutions in the CXXC active-site motif of the extracytoplasmic thioredoxin ResA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Staphylococcus aureus DsbA does not have a destabilizing disulfide. A new paradigm for bacterial oxidative folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

A calcium-gated lid and a large beta-roll sandwich are revealed by the crystal structure of extracellular lipase from Serratia marcescens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Characterization of human glutaredoxin 2 as iron-sulfur protein: a possible role as redox sensor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Gram-positive DsbE proteins function differently from Gram-negative DsbE homologs. A structure to function analysis of DsbE from Mycobacterium tuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

A bacterial collagen-binding domain with novel calcium-binding motif controls domain orientation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Structural basis for oligosaccharide-mediated adhesion of Pseudomonas aeruginosa in the lungs of cystic fibrosis patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

On the role of the cis-proline residue in the active site of DsbA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Crystal structures of reduced and oxidized DsbA: investigation of domain motion and thiolate stabilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

The solution structure of human thioredoxin complexed with its target from Ref-1 reveals peptide chain reversal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Crystal structure of the di-haem cytochrome c peroxidase from Pseudomonas aeruginosa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

A pathway for disulfide bond formation in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Crystal structure of the DsbA protein required for disulphide bond formation in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Solution structure of human thioredoxin in a mixed disulfide intermediate complex with its target peptide from the transcription factor NF kappa B

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Scaling and assessment of data quality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

The integration of macromolecular diffraction data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Developments in the CCP4 molecular-graphics project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Coot: model-building tools for molecular graphics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

ARP/wARP and automatic interpretation of protein electron density maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

How to measure and predict the molar absorption coefficient of a protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

20 March 2017

Small revisions to predicted distances around metal sites in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

7 April 2017

xdlMAPMAN and xdlDATAMAN - programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

7 April 2017

A combined transmembrane topology and signal peptide prediction method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

7 April 2017

Thioredoxin--a fold for all reasons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

7 April 2017

DSB proteins and bacterial pathogenicity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Glutaredoxin systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Reversible disulfide bond formation of intracellular proteins probed by NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Crystallographic refinement of ligand complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Structure and mechanism in the bacterial dihaem cytochrome c peroxidases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Calcium signalling in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Bacillus subtilis StoA Is a thiol-disulfide oxidoreductase important for spore cortex synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Mutations in the thiol-disulfide oxidoreductases BdbC and BdbD can suppress cytochrome c deficiency of CcdA-defective Bacillus subtilis cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

RTX toxin structure and function: a story of numerous anomalies and few analogies in toxin biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Roles of a conserved arginine residue of DsbB in linking protein disulfide-bond-formation pathway to the respiratory chain of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

The thioredoxin superfamily: redundancy, specificity, and gray-area genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Redox potentials of glutaredoxins and other thiol-disulfide oxidoreductases of the thioredoxin superfamily determined by direct protein-protein redox equilibria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Mutants in disulfide bond formation that disrupt flagellar assembly in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

The reactive and destabilizing disulfide bond of DsbA, a protein required for protein disulfide bond formation in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Maturation pathway of Escherichia coli heat-stable enterotoxin I: requirement of DsbA for disulfide bond formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

29 September 2017

Direct measurement of the equilibrium between glutathione and dithiothreitol by high performance liquid chromatography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

2 June 2018

Identification of a protein required for disulfide bond formation in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

2 June 2018

A homologue of the Escherichia coli DsbA protein involved in disulphide bond formation is required for enterotoxin biogenesis in Vibrio cholerae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2749146

2 June 2018

Redox properties of protein disulfide isomerase (DsbA) from Escherichia coli

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Thiol-disulphide oxidoreductase modules in the low-GC Gram-positive bacteria.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Bacillus subtilis ResA is a thiol-disulfide oxidoreductase involved in cytochrome c synthesis.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

A thioreduction pathway tethered to the membrane for periplasmic cytochromes c biogenesis; in vitro and in vivo studies.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

The CXXC motif: a rheostat in the active site.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Why is DsbA such an oxidizing disulfide catalyst?

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Prediction of pKa and redox properties in the thioredoxin superfamily.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Structural basis and kinetics of DsbD-dependent cytochrome c maturation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Snapshots of DsbA in action: detection of proteins in the process of oxidative folding

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Structural basis of Redox-coupled protein substrate selection by the cytochrome c biosynthesis protein ResA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Structural and functional characterization of an essential RTX subdomain of Bordetella pertussis adenylate cyclase toxin.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Structural and functional characterization of DsbC, a protein involved in disulfide bond formation in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Molecular Basis for Specificity of the Extracytoplasmic Thioredoxin ResA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

General Acid/Base Catalysis in the Active Site ofEscherichia coliThioredoxin†

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Structural diversity of calcium-binding proteins in bacteria: single-handed EF-hands?

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.005785

21 January 2018

Calcium signalling in bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/19535335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oxidative protein folding is driven by the electron transport system

1 reference

https://pubmed.ncbi.nlm.nih.gov/19535335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A single dipeptide sequence modulates the redox properties of a whole enzyme family

1 reference

https://pubmed.ncbi.nlm.nih.gov/19535335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Redox potentials of active-site bis(cysteinyl) fragments of thiol-protein oxidoreductases

1 reference

https://pubmed.ncbi.nlm.nih.gov/19535335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/19535335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M109.005785

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19535335%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

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