(Q27656647)

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The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Vibrio vulnificus

object named as

Vibrio vulnificus

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based on heuristic

inferred from title

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

author name string

Nguyen To Uyen

1

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3 February 2020

Suk-Youl Park

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Ji-Woo Choi

3

1 reference

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3 February 2020

Hyun-Ju Lee

4

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3 February 2020

Jeong-Sun Kim

6

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Europe PubMed Central

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3 February 2020

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publication date

22 July 2009

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3 February 2020

Nucleic Acids Research

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

37

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3 February 2020

20

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3 February 2020

6960-6969

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Structure of the motor subunit of type I restriction-modification complex EcoR124I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Structure of the DNA Repair Helicase Hel308 Reveals DNA Binding and Autoinhibitory Domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

On the DNA cleavage mechanism of Type I restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Nucleoside triphosphate-dependent restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Structure of Hjc, a Holliday junction resolvase, from Sulfolobus solfataricus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Crystal structure of the DNA nucleotide excision repair enzyme UvrB from Thermus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Recognition of flanking DNA sequences by EcoRV endonuclease involves alternative patterns of water-mediated contacts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Crystal structure and evolution of a transfer RNA splicing enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Structure of the multimodular endonuclease FokI bound to DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Coot: model-building tools for molecular graphics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Maximum-likelihood density modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Automated MAD and MIR structure solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

20 March 2017

X-Ray Structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase Core and Its Complex with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

7 April 2017

Crystallization and preliminary X-ray diffraction analysis of the HsdR subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

A RecB-family nuclease motif in the Type I restriction endonuclease EcoR124I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Crystal structure of the human ATP-dependent splicing and export factor UAP56.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

KpnBI is the prototype of a new family (IE) of bacterial type I restriction-modification system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

S-Adenosyl-L-methionine-dependent restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Helicases: a unifying structural theme?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Model for how type I restriction enzymes select cleavage sites in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Restriction and modification systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

Purification and biochemical characterisation of theEcoR124 type I modification methylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

29 September 2017

The interrelationship of helicase and nuclease domains during DNA translocation by the molecular motor EcoR124I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

27 November 2018

Structural insights into the cryptic DNA-dependent ATPase activity of UvrB.

1 reference

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27 November 2018

Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

27 November 2018

Purification and characterization of the methyltransferase from the type 1 restriction and modification system of Escherichia coli K12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2777439

27 November 2018

On the structure and operation of type I DNA restriction enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19625490

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI

1 reference

https://pubmed.ncbi.nlm.nih.gov/19625490

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a putative type I restriction-modification S subunit from Mycoplasma genitalium

1 reference

https://pubmed.ncbi.nlm.nih.gov/19625490

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/19625490

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The DNA recognition subunit of the type IB restriction-modification enzyme EcoAI tolerates circular permutions of its polypeptide chain

1 reference

https://pubmed.ncbi.nlm.nih.gov/19625490

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKP603

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19625490%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

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3 February 2020

PubMed publication ID

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3 February 2020

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