(Q27658127)

5

0 references

Eddy Arnold

6

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author name string

Brian P Hudson

1

0 references

Joel Quispe

2

0 references

Samuel Lara-González

3

0 references

Younggyu Kim

4

0 references

Richard H Ebright

7

0 references

Catherine L Lawson

Proceedings of the National Academy of Sciences of the United States of America

8

0 references

language of work or name

English

0 references

publication date

24 November 2009

0 references

published in

0 references

volume

106

0 references

issue

47

0 references

page(s)

19830-5

0 references

cites work

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Structural basis for substrate loading in bacterial RNA polymerase

20 March 2017

1 reference

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Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis

20 March 2017

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Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

20 March 2017

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Negative staining and image classification — powerful tools in modern electron microscopy

20 March 2017

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Catabolite activator protein: DNA binding and transcription activation

20 March 2017

1 reference

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Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

20 March 2017

1 reference

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Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

20 March 2017

1 reference

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

20 March 2017

1 reference

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Structure of the Escherichia coli RNA polymerase alpha subunit amino-terminal domain

20 March 2017

1 reference

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Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

20 March 2017

1 reference

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Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface

20 March 2017

1 reference

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Clustal W and Clustal X version 2.0

20 March 2017

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

1 reference

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

20 March 2017

1 reference

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PHENIX: building new software for automated crystallographic structure determination

20 March 2017

2 references

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20 March 2017

https://api.crossref.org/works/10.1073%2FPNAS.0908782106

EMAN: semiautomated software for high-resolution single-particle reconstructions

22 April 2017

1 reference

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SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Transcription activation by catabolite activator protein (CAP)

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

DNA is bound within the central hole to one or two of the six subunits of the T7 DNA helicase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

20 March 2017

1 reference

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Appion: an integrated, database-driven pipeline to facilitate EM image processing

20 March 2017

1 reference

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Protein structure modeling with MODELLER

7 April 2017

1 reference

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Automated molecular microscopy: the new Leginon system

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Organization of an activator-bound RNA polymerase holoenzyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

YUP.SCX: coaxing atomic models into medium resolution electron density maps

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

An EM view of the FokI synaptic complex by single particle analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Structural biology of cellular machines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

ACE: automated CTF estimation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Identification of the CRP regulon using in vitro and in vivo transcriptional profiling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Evolution of bacterial RNA polymerase: implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Requirement for two copies of RNA polymerase alpha subunit C-terminal domain for synergistic transcription activation at complex bacterial promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Conformational flexibility of bacterial RNA polymerase.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Structural organization of the RNA polymerase-promoter open complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Mapping the cAMP receptor protein contact site on the alpha subunit of Escherichia coli RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Exploitation of a chemical nuclease to investigate the location and orientation of the Escherichia coli RNA polymerase alpha subunit C-terminal domains at simple promoters that are activated by cyclic AMP receptor protein.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775702

Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0908782106

Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0908782106

Electron microscopy and 3D reconstructions reveal that human ATM kinase uses an arm-like domain to clamp around double-stranded DNA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0908782106

A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19903881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19903881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0908782106

1 reference

ADS bibcode

2009PNAS..10619830H

0 references

1 reference

1 reference

PubMed publication ID

19903881

1 reference