(Q35965155)

English

An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4.

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4. (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Escherichia coli

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author name string

Wilma Ross

1

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

David A Schneider

2

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Brian J Paul

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Aaron Mertens

4

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Europe PubMed Central

PMC publication ID

11 August 2017

Richard L Gourse

5

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Europe PubMed Central

PMC publication ID

11 August 2017

publication date

1 May 2003

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Europe PubMed Central

PMC publication ID

11 August 2017

Genes & Development

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Europe PubMed Central

PMC publication ID

11 August 2017

17

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Europe PubMed Central

PMC publication ID

11 August 2017

10

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

1293-1307

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

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The bacteriophage T4 transcription activator MotA interacts with the far-C-terminal region of the sigma70 subunit of Escherichia coli RNA polymerase

1 reference

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2 October 2017

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

1 reference

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Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

1 reference

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2 October 2017

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

1 reference

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2 October 2017

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

1 reference

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2 October 2017

Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters

1 reference

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2 October 2017

Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters

1 reference

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2 October 2017

Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove

1 reference

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2 October 2017

Interaction of the C-terminal domain of the E. coli RNA polymerase alpha subunit with the UP element: recognizing the backbone structure in the minor groove surface

1 reference

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2 October 2017

Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

1 reference

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2 October 2017

UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

1 reference

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Common fold in helix-hairpin-helix proteins

1 reference

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2 October 2017

Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase sigma(70) subunit: application of suppression genetics.

1 reference

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2 October 2017

The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus

1 reference

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2 October 2017

DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

1 reference

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2 October 2017

Transcription activation by catabolite activator protein (CAP)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

1 reference

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2 October 2017

The functional and regulatory roles of sigma factors in transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

The Escherichia coli Ada protein can interact with two distinct determinants in the sigma70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Identification of an UP element consensus sequence for bacterial promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase alpha subunit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Amino acid residues in the alpha-subunit C-terminal domain of Escherichia coli RNA polymerase involved in activation of transcription from the mtr promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Molecular systematic studies of eubacteria, using sigma70-type sigma factors of group 1 and group 2.

1 reference

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2 October 2017

Transcription activation at class II CAP-dependent promoters: two interactions between CAP and RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

The glutamic acid residue at amino acid 261 of the alpha subunit is a determinant of the intrinsic efficiency of RNA polymerase at the metE core promoter in Escherichia coli

1 reference

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2 October 2017

Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element

1 reference

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2 October 2017

Escherichia coli RNA polymerase holoenzyme: rapid reconstitution from recombinant alpha, beta, beta', and sigma subunits

1 reference

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A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

1 reference

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2 October 2017

Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Amino acid substitutions in the -35 recognition motif of sigma 70 that result in defects in phage lambda repressor-stimulated transcription

1 reference

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2 October 2017

Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength

1 reference

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2 October 2017

Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

1 reference

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2 October 2017

A mutation in the rpoA gene encoding the alpha subunit of RNA polymerase that affects metE-metR transcription in Escherichia coli

1 reference

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2 October 2017

Solution structure of the activator contact domain of the RNA polymerase alpha subunit

1 reference

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2 October 2017

Rate-limiting steps in RNA chain initiation

1 reference

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2 October 2017

Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro

1 reference

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One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution

1 reference

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Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants

1 reference

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2 October 2017

E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo

1 reference

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2 October 2017

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

1 reference

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Promoter recognition by Escherichia coli RNA polymerase: effects of the UP element on open complex formation and promoter clearance

1 reference

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Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma70 subunit

1 reference

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Protein-protein contacts that activate and repress prokaryotic transcription

1 reference

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11 July 2018

Flexible linker in the RNA polymerase alpha subunit facilitates the independent motion of the C-terminal activator contact domain.

1 reference

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HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site

1 reference

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Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

1 reference

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Factor-independent activation of Escherichia coli rRNA transcription. II. characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymerase

1 reference

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11 July 2018

The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter.

1 reference

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24 September 2018

Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.

1 reference

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Target of the transcriptional activation function of phage lambda cI protein

1 reference

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24 September 2018

Location, structure, and function of the target of a transcriptional activator protein.

1 reference

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24 September 2018

Mutational analysis of the role of the first helix of region 4.2 of the sigma 70 subunit of Escherichia coli RNA polymerase in transcriptional activation by activator protein PhoB.

1 reference

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24 September 2018

Protein-protein and protein-DNA interactions of sigma70 region 4 involved in transcription activation by lambdacI

1 reference

https://pubmed.ncbi.nlm.nih.gov/12756230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/12756230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/12756230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GAD.1079403

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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