(Q33616982)

28 July 2017

title

Common fold in helix-hairpin-helix proteins (English)

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28 July 2017

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X Shao

1

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28 July 2017

N V Grishin

series ordinal

2

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28 July 2017

language of work or name

English

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publication date

1 July 2000

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28 July 2017

published in

Nucleic Acids Research

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28 July 2017

volume

28

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28 July 2017

issue

14

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28 July 2017

page(s)

2643-2650

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Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

28 July 2017

cites work

1 reference

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DNA bending and a flip-out mechanism for base excision by the helix–hairpin–helix DNA glycosylase, Escherichia coli AlkA

21 June 2018

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DNA-binding proteins and evolution of transcription regulation in the archaea

21 June 2018

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The Zn-peptidase superfamily: functional convergence after evolutionary divergence

21 June 2018

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The alpha-subunit of protein prenyltransferases is a member of the tetratricopeptide repeat family

21 June 2018

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Solution structure of a conserved C-terminal domain of p73 with structural homology to the SAM domain.

21 June 2018

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The N-terminal domain of the human Rad51 protein binds DNA: structure and a DNA binding surface as revealed by NMR

21 June 2018

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Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science

21 June 2018

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The basic region/helix-loop-helix/leucine zipper domain of Myc proto-oncoproteins: function and regulation

21 June 2018

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Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

21 June 2018

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Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

21 June 2018

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Zinc finger proteins: watchdogs in muscle development

21 June 2018

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Envisioning the molecular choreography of DNA base excision repair

21 June 2018

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Oligomeric structure of the human EphB2 receptor SAM domain

21 June 2018

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The crystal structure of an Eph receptor SAM domain reveals a mechanism for modular dimerization

21 June 2018

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Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

21 June 2018

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Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

21 June 2018

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SCOP: a Structural Classification of Proteins database.

21 June 2018

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MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

21 June 2018

1 reference

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

21 June 2018

1 reference

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Solution structure of the cellular factor BAF responsible for protecting retroviral DNA from autointegration

21 June 2018

1 reference

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Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity

21 June 2018

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Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site.

21 June 2018

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The crystal structure of flap endonuclease-1 from Methanococcus jannaschii

21 June 2018

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How far divergent evolution goes in proteins

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Crystal structure of E.coli RuvA with bound DNA Holliday junction at 6 A resolution

21 June 2018

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SMART, a simple modular architecture research tool: identification of signaling domains

21 June 2018

1 reference

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Functional analyses of the domain structure in the Holliday junction binding protein RuvA

21 June 2018

1 reference

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Arac/XylS family of transcriptional regulators

21 June 2018

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Protein Data Bank archives of three-dimensional macromolecular structures.

21 June 2018

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SEALS: a system for easy analysis of lots of sequences.

21 June 2018

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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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Dali/FSSP classification of three-dimensional protein folds

21 June 2018

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SAM as a protein interaction domain involved in developmental regulation

21 June 2018

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Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis

21 June 2018

1 reference

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Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Do basic region-leucine zipper proteins bend their DNA targets ... does it matter?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Hidden Markov models for sequence analysis: extension and analysis of the basic method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Analysis of compositionally biased regions in sequence databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Structural basis for the excision repair of alkylation-damaged DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

The FSSP database: fold classification based on structure-structure alignment of proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

2.3 A crystal structure of the catalytic domain of DNA polymerase beta

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Non-globular domains in protein sequences: automated segmentation using complexity measures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Unified catalytic mechanism for DNA glycosylases.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Crystal structure of Thermus aquaticus DNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Solution structure of the activator contact domain of the RNA polymerase alpha subunit

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

Amino acid substitution matrices from protein blocks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102670

DNA recognition and superstructure formation by helix-turn-helix proteins

21 June 2018

1 reference

12 December 2020

Parameterization studies for the SAM and HMMER methods of hidden Markov model generation

1 reference

12 December 2020

SCOP: a Structural Classification of Proteins database

1 reference

12 December 2020

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/28.14.2643

1 reference

28 July 2017

1 reference

28 July 2017

1 reference