(Q27662895)

1

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Jianyu Zhu

2

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Haruichi Asahara

3

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Harry F Noller

Structures of the ribosome in intermediate states of ratcheting

4

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language of work or name

English

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publication date

4 August 2010

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published in

The EMBO Journal

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volume

29

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issue

15

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page(s)

2577-85

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Crystal structure of a translation termination complex formed with release factor RF2

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Structural basis for translation termination on the 70S ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Release Factors 2 from Escherichia coli and Thermus thermophilus: structural, spectroscopic and microcalorimetric studies

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Structure of the Escherichia coli ribosomal termination complex with release factor 2

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

A cryo-electron microscopic study of ribosome-bound termination factor RF2

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Structure of the 70S ribosome complexed with mRNA and tRNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Coot: model-building tools for molecular graphics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

PHENIX: building new software for automated crystallographic structure determination

20 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

20 March 2017

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

22 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

20 March 2017

https://api.crossref.org/works/10.1038/EMBOJ.2010.139

Improved methods for building protein models in electron density maps and the location of errors in these models

22 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

20 March 2017

https://api.crossref.org/works/10.1038/EMBOJ.2010.139

Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

20 March 2017

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Following movement of the L1 stalk between three functional states in single ribosomes.

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Peptide release on the ribosome depends critically on the 2' OH of the peptidyl-tRNA substrate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Peptide release on the ribosome: mechanism and implications for translational control

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Mechanism of peptide bond formation on the ribosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

A post-translational modification in the GGQ motif of RF2 from Escherichia coli stimulates termination of translation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

The accuracy of codon recognition by polypeptide release factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

A direct estimation of the context effect on the efficiency of termination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

UGA: A Third Nonsense Triplet in the Genetic Code

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Polypeptide chain termination in vitro: isolation of a release factor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Hydrolysis of fMet-tRNA by peptidyl transferase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Peptide chain termination. V. The role of release factors in mRNA terminator codon recognition

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Peptide chain termination. VII. The ribosomal and release factor requirements for peptide release

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Release factors differing in specificity for terminator codons

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Molecular basis for bacterial class I release factor methylation by PrmC.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Characterization of Three Proteins Involved in Polypeptide Chain Termination

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Possible involvement of peptidyl transferase in the termination step of protein biosynthesis

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Genetic code: the 'nonsense' triplets for chain termination and their suppression.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928684

Deletion of a conserved, central ribosomal intersubunit RNA bridge

19 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Stereochemistry of reaction paths at carbonyl centres

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Simulated-annealing real-space refinement as a tool in model building.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Methylation of bacterial release factors RF1 and RF2 is required for normal translation termination in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Effect of alanine versus glycine in alpha-helices on protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Two distinct components of release factor function uncovered by nucleophile partitioning analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

A model for how ribosomal release factors induce peptidyl-tRNA cleavage in termination of protein synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Contribution of hydrophobic interactions to protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.139

Thermodynamic analysis of cavity creating mutations in an engineered leucine zipper and energetics of glycerol-induced coiled coil stabilization

21 January 2018

1 reference

12 December 2020

[Mutation of a glutamine residue in the universal tripeptide GGQ in human eRF1 termination factor does not cause complete loss of its activity]

1 reference

12 December 2020

Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy

1 reference

12 December 2020

Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation

1 reference

12 December 2020

The essential role of the invariant GGQ motif in the function and stability in vivo of bacterial release factors RF1 and RF2

1 reference

12 December 2020

Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome

1 reference

12 December 2020

Identifiers

DOI

10.1038/EMBOJ.2010.139

1 reference

1 reference

1 reference

PubMed publication ID

20588254

1 reference