(Q27664990)

1

0 references

Yaser Hashem

2

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Iwona Wower

3

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Jianlin Lei

4

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Hstau Y Liao

5

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Christian Zwieb

6

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Jacek Wower

describes a project that uses

7

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language of work or name

English

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publication date

17 November 2010

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published in

The EMBO Journal

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volume

29

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issue

22

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page(s)

3819-25

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ImageQuant

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2989109/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA

1 reference

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Transfer-messenger RNA unfolds as it transits the ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB

20 March 2017

1 reference

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X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli

20 March 2017

1 reference

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Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

20 March 2017

1 reference

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Visualizing tmRNA entry into a stalled ribosome

20 March 2017

1 reference

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

20 March 2017

1 reference

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Structures of the bacterial ribosome at 3.5 A resolution

20 March 2017

1 reference

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Scalable molecular dynamics with NAMD

20 March 2017

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

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The PSIPRED protein structure prediction server

20 March 2017

1 reference

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Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

20 March 2017

1 reference

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Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

7 April 2017

1 reference

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Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels

7 April 2017

1 reference

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SmpB contributes to reading frame selection in the translation of transfer-messenger RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

The role of upstream sequences in selecting the reading frame on tmRNA.

29 September 2017

1 reference

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Preparation of macromolecular complexes for cryo-electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome

29 September 2017

1 reference

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tmRNA-induced release of messenger RNA from stalled ribosomes

29 September 2017

1 reference

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Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope

29 September 2017

1 reference

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tRNA slippage at the tmRNA resume codon

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study

29 September 2017

1 reference

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tmRNA.SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Structure probing of tmRNA in distinct stages of trans-translation

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Determinants on tmRNA for initiating efficient and precise trans-translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

Resuming translation on tmRNA: a unique mode of determining a reading frame

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2989109

One SmpB molecule accompanies tmRNA during its passage through the ribosomes.

2 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

How does tmRNA move through the ribosome?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

A simple and fast secondary structure prediction method using hidden neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

Pentobarbital-induced changes in Drosophila glutathione S-transferase D21 mRNA stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2010.255

Analysis of recognition of transfer-messenger RNA by the ribosomal decoding center

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20940705