(Q27666971)

22 June 2017

X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides (English)

1 reference

22 June 2017

0 references

X-ray crystallography

0 references

author name string

Michael L Gleghorn

1

1 reference

22 June 2017

Elena K Davydova

2

1 reference

22 June 2017

Ritwika Basu

3

1 reference

22 June 2017

Lucia B Rothman-Denes

4

1 reference

22 June 2017

Katsuhiko S Murakami

5

1 reference

22 June 2017

language of work or name

English

0 references

publication date

14 February 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

22 June 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

22 June 2017

108

1 reference

22 June 2017

9

1 reference

22 June 2017

3566-3571

1 reference

Structural Basis for DNA-Hairpin Promoter Recognition by the Bacteriophage N4 Virion RNA Polymerase

22 June 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

The X-ray crystal structure of RNA polymerase from Archaea

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Structural basis for substrate loading in bacterial RNA polymerase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Role of the catalytic metal during polymerization by DNA polymerase lambda

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

A general two-metal-ion mechanism for catalytic RNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

TFIIS and GreB: two like-minded transcription elongation factors with sticky fingers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Distinct roles of the active-site Mg2+ ligands, Asp882 and Asp705, of DNA polymerase I (Klenow fragment) during the prechemistry conformational transitions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

What a difference a decade makes: insights into translesion DNA synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Anatomy of Escherichia coli sigma70 promoters.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Magnesium-induced assembly of a complete DNA polymerase catalytic complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Geometry of metal-ligand interactions in proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Architecture of RNA polymerase II and implications for the transcription mechanism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

Asp537 and Asp812 in bacteriophage T7 RNA polymerase as metal ion-binding sites studied by EPR, flow-dialysis, and transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

A study of the mechanism of DNA polymerase I from Escherichia coli with diastereomeric phosphorothioate analogs of deoxyadenosine triphosphate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

A steady state assay for the RNA polymerase initiation reaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

N4 virion RNA polymerase sites of transcription initiation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

T7 RNA polymerase does not interact with the 5'-phosphate of the initiating nucleotide.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3048110

The structural mechanism of translocation and helicase activity in T7 RNA polymerase.

19 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

Structural basis for substrate selection by t7 RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

Specific sequences and a hairpin structure in the template strand are required for N4 virion RNA polymerase promoter recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

Complete crystallographic analysis of the dynamics of CCA sequence addition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

Low fidelity mutants in the O-helix of Thermus aquaticus DNA polymerase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

Role of T7 RNA polymerase His784 in start site selection and initial transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1016691108

Determinants of ribose specificity in RNA polymerization: effects of Mn2+ and deoxynucleoside monophosphate incorporation into transcripts

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21321236

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1016691108

1 reference

release_lltwsx75p5hwdccxgzhcmzrqpq

22 June 2017

0 references

0 references

0 references

1 reference