(Q27667598)

GOA release 2020-03-11

Ioc3p YFR013W

1 reference

GOA release 2020-03-11

author name string

Kazuhiro Yamada

1

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Timothy D Frouws

2

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Brigitte Angst

3

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Daniel J Fitzgerald

4

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Carl DeLuca

5

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Kyoko Schimmele

6

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David F Sargent

7

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Timothy J Richmond

A high-resolution atlas of nucleosome occupancy in yeast

8

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language of work or name

English

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publication date

28 April 2011

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published in

Nature

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volume

472

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issue

7344

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page(s)

448-53

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cites work

1 reference

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A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

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Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

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Nucleosome organization in the Drosophila genome.

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Dynamic regulation of nucleosome positioning in the human genome

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The biology of chromatin remodeling complexes

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Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae

21 January 2018

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Yeast Isw1p forms two separable complexes in vivo

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Dynamics of ATP-dependent chromatin assembly by ACF.

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Acf1, the largest subunit of CHRAC, regulates ISWI-induced nucleosome remodelling

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Role of nucleosome remodeling factor NURF in transcriptional activation of chromatin

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ATP-dependent nucleosome remodeling

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Chromatin remodeling by ATP-dependent molecular machines.

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Multiple roles for ISWI in transcription, chromosome organization and DNA replication

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ISWI complexes in Saccharomyces cerevisiae

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1 reference

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X-Ray Structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase Core and Its Complex with DNA

21 January 2018

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Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54

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Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI

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Searching protein structure databases with DaliLite v.3

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Structure of the SANT domain from the Xenopus chromatin remodeling factor ISWI

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Proteome survey reveals modularity of the yeast cell machinery

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Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

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Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

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Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae

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Dependency of ISW1a chromatin remodeling on extranucleosomal DNA.

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Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals

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Crystal structure of the nucleosome core particle at 2.8 A resolution

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Structure of RCC1 chromatin factor bound to the nucleosome core particle

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DNA stretching and extreme kinking in the nucleosome core

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Crystal structures of nucleosome core particles containing the '601' strong positioning sequence

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Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II.

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Nucleosome remodeling and transcriptional repression are distinct functions of Isw1 in Saccharomyces cerevisiae.

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Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes

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Protein secondary structure prediction based on position-specific scoring matrices

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Baculovirus expression system for heterologous multiprotein complexes.

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Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

21 January 2018

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Scaling and assessment of data quality

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Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0

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Methods used in the structure determination of bovine mitochondrial F1 ATPase

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Coot: model-building tools for molecular graphics

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PHENIX: building new software for automated crystallographic structure determination

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EMAN: semiautomated software for high-resolution single-particle reconstructions

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SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

21 January 2018

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UCSF Chimera--a visualization system for exploratory research and analysis

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Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

21 January 2018

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Spectral signal-to-noise ratio and resolution assessment of 3D reconstructions

21 January 2018

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Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking

21 January 2018

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Restoration of silencing in Saccharomyces cerevisiae by tethering of a novel Sir2-interacting protein, Esc8.

21 January 2018

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12 December 2020

Producing selenomethionine-labeled proteins with a baculovirus expression vector system

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12 December 2020

Expression and purification of recombinant histones and nucleosome reconstitution

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12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

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12 December 2020