(Q27667887)

2

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Reid M McCarty

3

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Vahe Bandarian

4

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Joseph E Wedekind

Journal of Biological Chemistry

5

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language of work or name

English

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publication date

15 July 2011

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published in

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volume

286

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issue

28

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page(s)

24626-37

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cites work

Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch

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Structural basis for recognition of S-adenosylhomocysteine by riboswitches

20 March 2017

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Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

20 March 2017

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Riboswitch structure: an internal residue mimicking the purine ligand

20 March 2017

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Structural basis of ligand binding by a c-di-GMP riboswitch

20 March 2017

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Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

20 March 2017

1 reference

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The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain

20 March 2017

1 reference

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Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase

20 March 2017

1 reference

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Structural insights into amino acid binding and gene control by a lysine riboswitch

20 March 2017

1 reference

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Crystal structure of the lysine riboswitch regulatory mRNA element

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria

20 March 2017

1 reference

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The distributions, mechanisms, and structures of metabolite-binding riboswitches

20 March 2017

1 reference

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Features and development of Coot

20 March 2017

1 reference

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The CCP4 suite: programs for protein crystallography

20 March 2017

1 reference

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A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

20 March 2017

1 reference

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Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

20 March 2017

1 reference

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Regulation of bacterial gene expression by riboswitches

7 April 2017

1 reference

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Recent developments in the PHENIX software for automated crystallographic structure determination

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Calculation of hydrodynamic properties of globular proteins from their atomic-level structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Ribozymes and riboswitches: modulation of RNA function by small molecules

7 April 2017

1 reference

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Structural characterization of proteins and complexes using small-angle X-ray solution scattering.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Folding of a transcriptionally acting preQ1 riboswitch

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Riboswitch function: flipping the switch or tuning the dimmer?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Determination of riboswitch structures: light at the end of the tunnel?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

The ligand-free state of the TPP riboswitch: a partially folded RNA structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Averaged kick maps: less noise, more signal... and probably less bias

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

The deazapurine biosynthetic pathway revealed: in vitro enzymatic synthesis of PreQ(0) from guanosine 5'-triphosphate in four steps

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

New paradigm for macromolecular crystallography experiments at SSRL: automated crystal screening and remote data collection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Deciphering deazapurine biosynthesis: pathway for pyrrolopyrimidine nucleosides toyocamycin and sangivamycin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Ligand-dependent folding of the three-way junction in the purine riboswitch

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Site-specific modification of Shigella flexneri virF mRNA by tRNA-guanine transglycosylase in vitro

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Riboswitches as antibacterial drug targets

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Biosynthesis of the 7-deazaguanosine hypermodified nucleosides of transfer RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Changes in biomolecular conformation seen by small angle X-ray scattering

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Hydrogen bonding and biological specificity analysed by protein engineering

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

The copper-inducible cin operon encodes an unusual methionine-rich azurin-like protein and a pre-Q0 reductase in Pseudomonas putida KT2440

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Purification, crystallization, and X-ray diffraction analysis of small ribozymes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3137038

Aminoacylation of the anticodon stem by a tRNA-synthetase paralog: relic of an ancient code?

2 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

Mechanistic studies of Bacillus subtilis QueF, the nitrile oxidoreductase involved in queuosine biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

A solution for the best rotation to relate two sets of vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

PRIMUS: a Windows PC-based system for small-angle scattering data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

Evidence for Pseudoknot Formation of Class I preQ1Riboswitch Aptamers

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.230375

Improving biosensor analysis

21 January 2018

1 reference

12 December 2020

Relationship of the queuine content of transfer ribonucleic acids to histopathological grading and survival in human lung cancer

1 reference

12 December 2020

tRNA-Guanine Transglycosylase from Escherichia coli: Structure-Activity Studies Investigating the Role of the Aminomethyl Substituent of the Heterocyclic Substrate PreQ1

1 reference

12 December 2020

Effects of a diet deficient in tyrosine and queuine on germfree mice

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M111.230375

1 reference

1 reference

1 reference

PubMed publication ID

21592962

1 reference