Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q27675334)
Watch
English
The Binding of Antibiotics in OmpF Porin
scientific article
In more languages
edit
Statements
instance of
scholarly article
0 references
title
The Binding of Antibiotics in OmpF Porin
(English)
0 references
main subject
structural biology
0 references
author name string
Brigitte K Ziervogel
series ordinal
1
0 references
Benoît Roux
series ordinal
2
0 references
publication date
8 January 2013
0 references
published in
Structure
0 references
volume
21
0 references
issue
1
0 references
page(s)
76-87
0 references
cites work
Asymmetric pore occupancy in crystal structure of OmpF porin from Salmonella typhi
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Altered antibiotic transport in OmpC mutants isolated from a series of clinical strains of multi-drug resistant E. coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Biochemical and Structural Characterization of Mycobacterium tuberculosis β-Lactamase with the Carbapenems Ertapenem and Doripenem
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Cation-selective Pathway of OmpF Porin Revealed by Anomalous X-ray Diffraction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
On the function and structure of synthetically modified porins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Crystal structures of the OmpF porin: function in a colicin translocon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
The structure of OmpF porin in a tetragonal crystal form
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Crystal structures explain functional properties of two E. coli porins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
All-atom empirical potential for molecular modeling and dynamics studies of proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Overview of the CCP4 suite and current developments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Phasercrystallographic software
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Scalable molecular dynamics with NAMD
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Coot: model-building tools for molecular graphics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Refinement of macromolecular structures by the maximum-likelihood method
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
How beta-lactam antibiotics enter bacteria: a dialogue with the porins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
20 March 2017
Automatic atom type and bond type perception in molecular mechanical calculations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
7 April 2017
Molecular basis of bacterial outer membrane permeability revisited
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
7 April 2017
Outer membrane permeability and antibiotic resistance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
The membrane potential and its representation by a constant electric field in computer simulations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Automated builder and database of protein/membrane complexes for molecular dynamics simulations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Crystal structure of osmoporin OmpC from E. coli at 2.0 A.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Interaction of zwitterionic penicillins with the OmpF channel facilitates their translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Microscopic Mechanism of Antibiotics Translocation through a Porin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Designed to penetrate: time-resolved interaction of single antibiotic molecules with bacterial pores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Substitutions in the eyelet region disrupt cefepime diffusion through the Escherichia coli OmpF channel
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Gonococcal resistance to beta-lactams and tetracycline involves mutation in loop 3 of the porin encoded at the penB locus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Prevalence of outer membrane porin alteration in beta-lactam-antibiotic-resistant Enterobacter aerogenes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Porin channels in Escherichia coli: studies with beta-lactams in intact cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Diffusion of beta-lactam antibiotics through the porin channels of Escherichia coli K-12
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
29 September 2017
Bridging timescales and length scales: from macroscopic flux to the molecular mechanism of antibiotic diffusion through porins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
2 June 2018
Alteration of pore properties of Escherichia coli OmpF induced by mutation of key residues in anti-loop 3 region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
2 June 2018
Antibiotic resistance caused by gram-negative multidrug efflux pumps
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
2 June 2018
A kinetic Monte Carlo approach to investigate antibiotic translocation through bacterial porins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Divalent cations reduce the pH sensitivity of OmpF channel inducing the pKashift of key acidic residues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Toward screening for antibiotics with enhanced permeation properties through bacterial porins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Molecular simulations reveal the mechanism and the determinants for ampicillin translocation through OmpF.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Investigating reaction pathways in rare events simulations of antibiotics diffusion through protein channels
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Carbapenems and SHV-1 beta-lactamase form different acyl-enzyme populations in crystals and solution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Automated ligand placement and refinement with a combined force field and shape potential.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Beta-lactam screening by specific residues of the OmpF eyelet
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Colicins, spermine and cephalosporins: a competitive interaction with the OmpF eyelet
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
Coupling site-directed mutagenesis with high-level expression: large scale production of mutant porins from E. coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3545085
retrieved
27 November 2018
In vivo and in vitro emergence of simultaneous resistance to both beta-lactam and aminoglycoside antibiotics in a strain of Serratia marcescens
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23201272
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
CHARMM-GUI: a web-based graphical user interface for CHARMM
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23201272
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Purification and characterization of monomeric Escherichia coli vitamin B12 receptor with high affinity for colicin E3
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23201272
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Structural and functional characterization of a His-tagged PhoE pore protein of Escherichia coli
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23201272
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.STR.2012.10.014
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4923902
OpenCitations bibliographic resource ID
4923902
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4923902
PMCID
3545085
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4923902
PubMed ID
23201272
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
4923902
ResearchGate publication ID
233827583
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
