(Q27677866)

1

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Jack A Dunkle

2

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Tatsuya Maehigashi

3

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Mai N Dang

4

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Aishwarya Devaraj

5

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Stacey J Miles

6

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Daoming Qin

7

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Kurt Fredrick

8

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Christine M Dunham

Proceedings of the National Academy of Sciences of the United States of America

9

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language of work or name

English

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publication date

11 June 2013

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published in

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volume

110

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issue

24

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page(s)

9716-21

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cites work

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The Mechanism for Activation of GTP Hydrolysis on the Ribosome

20 March 2017

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Structural aspects of messenger RNA reading frame maintenance by the ribosome

20 March 2017

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PHENIX: a comprehensive Python-based system for macromolecular structure solution

20 March 2017

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MolProbity: all-atom structure validation for macromolecular crystallography

20 March 2017

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The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

20 March 2017

1 reference

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Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome

20 March 2017

1 reference

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Selection of tRNA by the ribosome requires a transition from an open to a closed form

20 March 2017

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Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Crystal structure of the ribosome at 5.5 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Features and development of Coot

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

20 March 2017

1 reference

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Structure of the 70S ribosome complexed with mRNA and tRNA

20 March 2017

1 reference

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Structures of the bacterial ribosome at 3.5 A resolution

20 March 2017

1 reference

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Kinetic amplification of enzyme discrimination

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Accurate structural correlations from maximum likelihood superpositions

20 March 2017

1 reference

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Evolutionary optimization of speed and accuracy of decoding on the ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

20 March 2017

DNA replication fidelity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Optimal simultaneous superpositioning of multiple structures with missing data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Novel base triples in RNA structures revealed by graph theoretical searching methods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Transfer RNA-mediated regulation of ribosome dynamics during protein synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

RNA polymerase fidelity and transcriptional proofreading

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Fidelity at the molecular level: lessons from protein synthesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Genetic and structural analysis of base substitutions in the central pseudoknot of Thermus thermophilus 16S ribosomal RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

DNA polymerases and aminoacyl-tRNA synthetases: shared mechanisms for ensuring the fidelity of gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Allosteric regulation and catalysis emerge via a common route.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Free-energy landscape of enzyme catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Structural insights into translational fidelity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

The G222D mutation in elongation factor Tu inhibits the codon-induced conformational changes leading to GTPase activation on the ribosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

GTP consumption of elongation factor Tu during translation of heteropolymeric mRNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Analysis of rpsD mutations in Escherichia coli. I. Comparison of mutants with various alterations in ribosomal protein S4.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

Is there proofreading during polypeptide synthesis?

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3683721

A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity.

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1301585110

Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1301585110

Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1301585110

Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1301585110

Compensatory evolution reveals functional interactions between ribosomal proteins S12, L14 and L19.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1301585110

Affinity purification of in vivo-assembled ribosomes for in vitro biochemical analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1301585110

A novel mutation in ribosomal protein S4 that affects the function of a mutated RF1

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23630274