(Q27678926)

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The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2

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scholarly article

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The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2 (English)

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5

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object named as

Wim G J Hol

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author name string

Young-Jun Park

1

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Tanya Budiarto

2

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Meiting Wu

3

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publication date

August 2012

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Nucleic Acids Research

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40

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6966-77

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14

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copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

7 November 2016

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April 2022 Public Data File from Crossref

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Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody

1 reference

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Structural and Functional Studies on the Interaction of GspC and GspD in the Type II Secretion System

1 reference

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20 March 2017

Structure of the guanylyltransferase domain of human mRNA capping enzyme

1 reference

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20 March 2017

Structures of a key interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies

1 reference

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Crystal Structure of the N-Terminal Domain of the Secretin GspD from ETEC Determined with the Assistance of a Nanobody

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Structural basis for nick recognition by a minimal pluripotent DNA ligase

1 reference

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20 March 2017

Last stop on the road to repair: structure of E. coli DNA ligase bound to nicked DNA-adenylate

1 reference

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1 reference

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1 reference

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20 March 2017

X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes

1 reference

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20 March 2017

Phasercrystallographic software

1 reference

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20 March 2017

Inference of macromolecular assemblies from crystalline state

1 reference

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The Buccaneer software for automated model building. 1. Tracing protein chains

1 reference

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20 March 2017

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

1 reference

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20 March 2017

Coot: model-building tools for molecular graphics

1 reference

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20 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

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20 March 2017

The CCP4 suite: programs for protein crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

20 March 2017

PHENIX: building new software for automated crystallographic structure determination

1 reference

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20 March 2017

ESPript: analysis of multiple sequence alignments in PostScript

1 reference

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Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin

1 reference

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Human DNA ligase I completely encircles and partially unwinds nicked DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

20 March 2017

Mitochondrial RNA processing in trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Endonuclease associations with three distinct editosomes in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Uridine insertion/deletion RNA editing in Trypanosomatids: specific stimulation in vitro of Leishmania tarentolae REL1 RNA ligase activity by the MP63 zinc finger protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

A protein-protein interaction map of trypanosome ~20S editosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

DNA and RNA ligases: structural variations and shared mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

The C-terminal domain of T4 RNA ligase 1 confers specificity for tRNA repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

The closed structure of an archaeal DNA ligase from Pyrococcus furiosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

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TbMP42, a protein component of the RNA editing complex in African trypanosomes, has endo-exoribonuclease activity

1 reference

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Complex management: RNA editing in trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

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1 reference

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29 September 2017

High resolution crystal structure of a key editosome enzyme from Trypanosoma brucei: RNA editing ligase 1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Comparative analysis of editosome proteins in trypanosomatids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Natural and induced dyskinetoplastic trypanosomatids: how to live without mitochondrial DNA.

1 reference

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29 September 2017

Assembly and function of the RNA editing complex in Trypanosoma brucei requires band III protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

TbMP81 is required for RNA editing in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Editing machines: the complexities of trypanosome RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Four related proteins of the Trypanosoma brucei RNA editing complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Nick recognition by DNA ligases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

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1 reference

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29 September 2017

DNA ligase: structure, mechanism, and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

RNA editing in trypanosomatid mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life cycle stages of Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

29 September 2017

In Trypanosoma brucei RNA editing, TbMP18 (band VII) is critical for editosome integrity and for both insertional and deletional cleavages.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

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A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

2 June 2018

Compositionally and functionally distinct editosomes in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

2 June 2018

KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

2 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

2 June 2018

RNA editing in kinetoplastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

Molecular architecture and ligand recognition determinants for T4 RNA ligase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

Disruption of the zinc finger motifs in the Leishmania tarentolae LC-4 (=TbMP63) L-complex editing protein affects the stability of the L-complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

Separate insertion and deletion subcomplexes of the Trypanosoma brucei RNA editing complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

Trypanosome mitochondrial 3' terminal uridylyl transferase (TUTase): the key enzyme in U-insertion/deletion RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

RNA editing: a mechanism for gRNA-specified uridylate insertion into precursor mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413154

27 November 2018

Cycles of progressive realignment of gRNA with mRNA in RNA editing

1 reference

https://pubmed.ncbi.nlm.nih.gov/22561373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/22561373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphism and Mitochondrial Activity In Sleeping Sickness Trypanosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22561373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/NAR/GKS369

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