(Q27679843)

24 June 2017

title

A two-domain elevator mechanism for sodium/proton antiport (English)

1 reference

24 June 2017

author

Christoph von Ballmoos

3

1 reference

24 June 2017

David L Dotson

6

0 references

David Drew

David Drew

10

0 references

Alexander Cameron

Alexander D Cameron

9

0 references

Simon Newstead

Simon Newstead

4

0 references

Oliver Beckstein

Oliver Beckstein

8

0 references

author name string

Chiara Lee

1

1 reference

24 June 2017

Hae Joo Kang

2

1 reference

24 June 2017

So Iwata

7

1 reference

24 June 2017

Povilas Uzdavinys

5

1 reference

24 June 2017

language of work or name

English

0 references

publication date

1 September 2013

1 reference

24 June 2017

1 reference

24 June 2017

volume

501

1 reference

24 June 2017

issue

7468

1 reference

24 June 2017

page(s)

573-577

1 reference

Crystal structure of a bacterial homologue of the bile acid sodium symporter ASBT

24 June 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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22 April 2017

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Proton-sodium stoichiometry of NhaA, an electrogenic antiporter from Escherichia coli

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Comparison of simple potential functions for simulating liquid water

20 March 2017

1 reference

https://api.crossref.org/works/10.1038/NATURE12484

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

22 April 2017

1 reference

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Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Electron-density map interpretation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Canonical sampling through velocity rescaling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Visualizing density maps with UCSF Chimera

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Very fast empirical prediction and rationalization of protein pKa values

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

A model-structure of a periplasm-facing state of the NhaA antiporter suggests the molecular underpinnings of pH-induced conformational changes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

MDAnalysis: a toolkit for the analysis of molecular dynamics simulations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Functional asymmetry of the F(0) motor in bacterial ATP synthases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Tuning Escherichia coli for membrane protein overexpression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

The enlightening encounter between structure and function in the NhaA Na+-H+ antiporter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Static light scattering to characterize membrane proteins in detergent solution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Deltapsi and DeltapH are equivalent driving forces for proton transport through isolated F(0) complexes of ATP synthases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Coarse-grained MD simulations of membrane protein-bilayer self-assembly.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Mechanism of Na+/H+ antiporting.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Discontinuous membrane helices in transport proteins and their correlation with function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Dimerization is crucial for the function of the Na+/H+ exchanger NHE1.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Structure of a Na+/H+ antiporter and insights into mechanism of action and regulation by pH.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Evolutionary origins of eukaryotic sodium/proton exchangers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

NhaA of Escherichia coli, as a model of a pH-regulated Na+/H+antiporter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

RSPS version 4.0: a semi-interactive vector-search program for solving heavy-atom derivatives

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Three-dimensional structure of the ion-coupled transport protein NhaA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Projection structure of NhaA, a secondary transporter from Escherichia coli, at 4.0 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Revealing the ligand binding site of NhaA Na+/H+ antiporter and its pH dependence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Bendix: intuitive helix geometry analysis and abstraction.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Transport mechanism and pH regulation of the Na+/H+ antiporter NhaA from Escherichia coli: an electrophysiological study

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Benchmarking membrane protein detergent stability for improving throughput of high-resolution X-ray structures

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Structure of the archaeal Na+/H+ antiporter NhaP1 and functional role of transmembrane helix 1.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Conformations of NhaA, the Na+/H+ exchanger from Escherichia coli, in the pH-activated and ion-translocating states

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

pH-induced structural change in a sodium/proton antiporter from Methanococcus jannaschii

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Proton/sodium ion antiport in Escherichia coli

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

Conformational changes in NhaA Na+/H+ antiporter.

2 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Optimization of membrane protein overexpression and purification using GFP fusions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Functional characterization of a NapA Na(+)/H(+) antiporter from Thermus thermophilus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Monomers of the NhaA Na+/H+ antiporter of Escherichia coli are fully functional yet dimers are beneficial under extreme stress conditions at alkaline pH in the presence of Na+ or Li+.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

The fourth transmembrane domain of the Helicobacter pylori Na+/H+ antiporter NhaA faces a water-filled channel required for ion transport.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Identification and characterization of functional residues in a Na+/H+ antiporter (NhaA) from Escherichia coli by random mutagenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Green fluorescent protein as an indicator to monitor membrane protein overexpression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Ultrafast purification and reconstitution of His-tagged cysteine-less Escherichia coli F1Fo ATP synthase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Coarse-grained molecular dynamics simulations of the energetics of helix insertion into a lipid bilayer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

Kinetic properties of NhaB, a Na+/H+ antiporter from Escherichia coli.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3914025

From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23995679

12 December 2020

inferred from PubMed ID database lookup

Overproduction and purification of a functional Na+/H+ antiporter coded by nhaA (ant) from Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23995679

12 December 2020

inferred from PubMed ID database lookup

xia2: an expert system for macromolecular crystallography data reduction

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

7 January 2021

Polymorphic transitions in single crystals: A new molecular dynamics method

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

7 January 2021

A smooth particle mesh Ewald method

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

7 January 2021

Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12484

7 January 2021

Identifiers

DOI

10.1038/NATURE12484

1 reference

Dimensions Publication ID

24 June 2017

1044632622

0 references

OpenCitations bibliographic resource ID

2261277

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2261277

1 reference