(Q27679905)

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Complex Structure of the DNA-binding Domain of AdpA, the Global Transcription Factor in Streptomyces griseus, and a Target Duplex DNA Reveals the Structural Basis of Its Tolerant DNA Sequence Specificity

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24019524%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Complex structure of the DNA-binding domain of AdpA, the global transcription factor in Streptomyces griseus, and a target duplex DNA reveals the structural basis of its tolerant DNA sequence specificity (English)

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Europe PubMed Central

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20 February 2020

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Streptomyces griseus

object named as

Streptomyces griseus

1 reference

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inferred from title

3

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20 February 2020

Ken-ichi Miyazono

4

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Europe PubMed Central

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20 February 2020

6

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20 February 2020

Masaru Tanokura

7

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Masaru Tanokura

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Europe PubMed Central

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20 February 2020

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Ming Dong Yao

1

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20 February 2020

Jun Ohtsuka

2

1 reference

Europe PubMed Central

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20 February 2020

Yuehua Zhi

5

1 reference

Europe PubMed Central

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20 February 2020

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publication date

9 September 2013

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20 February 2020

Journal of Biological Chemistry

1 reference

Europe PubMed Central

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20 February 2020

288

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20 February 2020

43

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Europe PubMed Central

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20 February 2020

31019-31029

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24019524%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Protein structure prediction servers at University College London

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

Molecular replacement with MOLREP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

Coot: model-building tools for molecular graphics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

Arac/XylS family of transcriptional regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

20 March 2017

Conformational analysis of nucleic acids revisited: Curves+

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

7 April 2017

Hormonal control by A-factor of morphological development and secondary metabolism in Streptomyces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Promoter discrimination at class I MarA regulon promoters mediated by glutamic acid 89 of the MarA transcriptional activator of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Origins of specificity in protein-DNA recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Control of the Streptomyces Subtilisin inhibitor gene by AdpA in the A-factor regulatory cascade in Streptomyces griseus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

AdpA, a central transcriptional regulator in the A-factor regulatory cascade that leads to morphological development and secondary metabolism in Streptomyces griseus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Transcriptional control by A-factor of two trypsin genes in Streptomyces griseus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Transcriptional switch on of ssgA by A-factor, which is essential for spore septum formation in Streptomyces griseus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Control by A-factor of a metalloendopeptidase gene involved in aerial mycelium formation in Streptomyces griseus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

AraC-XylS database: a family of positive transcriptional regulators in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

An A-factor-dependent extracytoplasmic function sigma factor (sigma(AdsA)) that is essential for morphological development in Streptomyces griseus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

29 September 2017

Purification, crystallization and preliminary X-ray analysis of the DNA-binding domain of AdpA, the central transcription factor in the A-factor regulatory cascade in the filamentous bacterium Streptomyces griseus, in complex with a duplex DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

2 June 2018

Genome-wide distribution of AdpA, a global regulator for secondary metabolism and morphological differentiation in Streptomyces, revealed the extent and complexity of the AdpA regulatory network.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

2 June 2018

Three chymotrypsin genes are members of the AdpA regulon in the A-factor regulatory cascade in Streptomyces griseus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

2 June 2018

amfR, an essential gene for aerial mycelium formation, is a member of the AdpA regulon in the A‐factor regulatory cascade in Streptomyces griseus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829415

2 June 2018

DNA-binding specificity of AdpA, a transcriptional activator in the A-factor regulatory cascade in Streptomyces griseus.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.473611

21 January 2018

Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.473611

21 January 2018

The regulator of streptomycin gene expression, StrR, of Streptomyces griseus is a DNA binding activator protein with multiple recognition sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strict regulation of morphological differentiation and secondary metabolism by a positive feedback loop between two global regulators AdpA and BldA in Streptomyces griseus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of aerial mycelium formation by the BldK oligopeptide ABC transporter in Streptomyces griseus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-directed mutagenesis of double-stranded DNA by the polymerase chain reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autorepression of AdpA of the AraC/XylS family, a key transcriptional activator in the A-factor regulatory cascade in Streptomyces griseus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic changes in the extracellular proteome caused by absence of a pleiotropic regulator AdpA in Streptomyces griseus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24019524

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M113.473611

2 references

Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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20 February 2020

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Consolidated OpenCitations Corpus – April 2017

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PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24019524%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24019524%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

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