(Q27733419)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8807843%20AND%20SRC:MED&resulttype=core&format=json

19 October 2019

title

Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage (English)

1 reference

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19 October 2019

0 references

Christopher T. Workman

3

1 reference

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19 October 2019

author name string

Portmann S

1

1 reference

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19 October 2019

Grimm S

2

1 reference

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19 October 2019

Usman N

4

1 reference

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19 October 2019

Egli M

5

1 reference

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19 October 2019

publication date

1 March 1996

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19 October 2019

published in

Chemistry and Biology

1 reference

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19 October 2019

volume

3

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19 October 2019

issue

3

1 reference

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19 October 2019

page(s)

173-184

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A difference in the importance of bulged nucleotides and their parent base pairs in the binding of transcription factor IIIA to Xenopus 5S RNA and 5S RNA genes

19 October 2019

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Refolded HIV-1 tat protein protects both bulge and loop nucleotides in TAR RNA from ribonucleolytic cleavage

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Effects of mutations of the bulged nucleotide in the conserved P7 pairing element of the phage T4 td intron on ribozyme function

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Mutational analysis of the yeast U2 snRNA suggests a structural similarity to the catalytic core of group I introns

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Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model

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Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites

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Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides.

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Effects of single-base bulges on intercalator binding to small RNA and DNA hairpins and a ribosomal RNA fragment.

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Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

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Thermal stability of RNA hairpins containing a four-membered loop and a bulge nucleotide

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DNA bending by the bulge defect

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Bulge loops used to measure the helical twist of RNA in solution

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RNA bulges and the helical periodicity of double-stranded RNA

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Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element

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Major groove accessibility of RNA

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7 January 2021

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

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7 January 2021

Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

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7 January 2021

Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex

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7 January 2021

Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution

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7 January 2021

Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

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Preferential location of bulged guanosine internal to a G.cntdot.C tract by proton NMR

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7 January 2021

Binding of 9-aminoacridine to bulged-base DNA oligomers from a frame-shift hot spot

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Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization

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Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex

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7 January 2021

NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTCGCG)2 via a hybrid relaxation matrix procedure

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7 January 2021

Extra thymidine stacks into the d(CTGGTGCGG).d(CCGCCCAG) duplex. An NMR and modelbuilding study

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Conformational transitions in cytidine bulge-containing deoxytridecanucleotide duplexes: extra cytidine equilibrates between looped out (low temperature) and stacked (elevated temperature) conformations in solution

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Bulge-out structures in the single-stranded trimer AUA and in the duplex (CUGGUGCGG).(CCGCCCAG). A model-building and NMR study

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7 January 2021

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