(Q27860850)

3

0 references

Haim Ashkenazy

object named as

Haim Ashkenazy

1

0 references

Nir Ben-Tal

object named as

Nir Ben-Tal

5

0 references

author name string

Elana Erez

Creative Commons Attribution-NonCommercial 2.5 Generic

2

0 references

language of work or name

English

0 references

publication date

July 2010

0 references

published in

Nucleic Acids Research

0 references

volume

38

0 references

issue

Web Server issue

0 references

page(s)

W529-33

0 references

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

PyMOL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=PMC2896094

cites work

The accuracy of several multiple sequence alignment programs for proteins

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ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

20 March 2017

1 reference

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The Bioperl toolkit: Perl modules for the life sciences

20 March 2017

1 reference

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

20 March 2017

1 reference

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20 March 2017

The Protein Data Bank

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

20 March 2017

1 reference

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The rapid generation of mutation data matrices from protein sequences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Biomolecules in the computer: Jmol to the rescue

20 March 2017

1 reference

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Recent developments in the MAFFT multiple sequence alignment program

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

An improved general amino acid replacement matrix

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

RASMOL: biomolecular graphics for all

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

The universal protein resource (UniProt)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

UniRef: comprehensive and non-redundant UniProt reference clusters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Twilight zone of protein sequence alignments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Protein database searches using compositionally adjusted substitution matrices

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

GAL4 transcription factor is not a "zinc finger" but forms a Zn(II)2Cys6 binuclear cluster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

DNA recognition by GAL4: structure of a protein-DNA complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Identification of DNA-binding proteins using structural, electrostatic and evolutionary features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Genetic evidence that zinc is an essential co-factor in the DNA binding domain of GAL4 protein

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Detection of functionally important regions in "hypothetical proteins" of known structure

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

ConSeq: the identification of functionally and structurally important residues in protein sequences

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896094

Model of amino acid substitution in proteins encoded by mitochondrial DNA

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20478830

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ399

1 reference

journals/nar/AshkenazyEMPB10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

20478830

1 reference