(Q27929531)

30 November 2016

title

Rtt109 prevents hyper-amplification of ribosomal RNA genes through histone modification in budding yeast (English)

1 reference

PubMed

Replication fork barrier binding protein FOB1 YDR110W

30 November 2016

main subject

1 reference

H3 histone acetyltransferase RTT109 YLL002W

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author name string

Takehiko Kobayashi

series ordinal

3

0 references

Satoru Ide

series ordinal

1

0 references

Kimiko Saka

series ordinal

2

0 references

language of work or name

English

0 references

publication date

April 2013

0 references

1 reference

Creative Commons Attribution 4.0 International

30 November 2016

volume

9

0 references

issue

4

0 references

page(s)

e1003410

0 references

copyright license

start time

4 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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20 March 2017

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20 March 2017

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Histone chaperone specificity in Rtt109 activation

20 March 2017

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Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75

20 March 2017

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Rtt101 and Mms1 in budding yeast form a CUL4(DDB1)-like ubiquitin ligase that promotes replication through damaged DNA

20 March 2017

1 reference

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Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assembly

20 March 2017

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Chaperone control of the activity and specificity of the histone H3 acetyltransferase Rtt109.

20 March 2017

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Budding yeast Mms22 and Mms1 regulate homologous recombination induced by replisome blockage

20 March 2017

1 reference

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Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity

20 March 2017

1 reference

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Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication

20 March 2017

1 reference

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Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56

20 March 2017

1 reference

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Rtt109 is required for proper H3K56 acetylation: a chromatin mark associated with the elongating RNA polymerase II.

20 March 2017

1 reference

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Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis

20 March 2017

1 reference

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Recombination Regulation by Transcription-Induced Cohesin Dissociation in rDNA Repeats

20 March 2017

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The replication fork barrier site forms a unique structure with Fob1p and inhibits the replication fork

20 March 2017

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Break-induced replication: a review and an example in budding yeast

20 March 2017

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Elimination of replication block protein Fob1 extends the life span of yeast mother cells.

20 March 2017

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A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.

20 March 2017

1 reference

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The economics of ribosome biosynthesis in yeast

20 March 2017

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20 March 2017

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Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery

7 April 2017

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Gene amplification and adaptive evolution in bacteria.

29 September 2017

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Histone H3 K56 hyperacetylation perturbs replisomes and causes DNA damage

29 September 2017

1 reference

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Proliferating cell nuclear antigen and ASF1 modulate silent chromatin in Saccharomyces cerevisiae via lysine 56 on histone H3.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Strategies to maintain the stability of the ribosomal RNA gene repeats--collaboration of recombination, cohesion, and condensation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Gene amplification in cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.

29 September 2017

1 reference

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Spontaneous rDNA copy number variation modulates Sir2 levels and epigenetic gene silencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

The absence of the yeast chromatin assembly factor Asf1 increases genomic instability and sister chromatid exchange

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Transcription-dependent recombination and the role of fork collision in yeast rDNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Sir2: an NAD-dependent histone deacetylase that connects chromatin silencing, metabolism, and aging

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Histone acetylation and cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Differential synthesis of the genes for ribosomal RNA during amphibian oögenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Specific gene amplification in oocytes. Oocyte nuclei contain extrachromosomal replicas of the genes for ribosomal RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

The amplification of ribosomal RNA genes involves a rolling circle intermediate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Direct evidence for SIR2 modulation of chromatin structure in yeast rDNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616922

Abundance of ribosomal RNA gene copies maintains genome integrity

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003410

SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003410

Chromatin dynamics mediated by histone modifiers and histone chaperones in postreplicative recombination

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003410

Analysis of DNA replication in Saccharomyces cerevisiae by two-dimensional and pulsed-field gel electrophoresis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23593017

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Quantitative analysis of the transcription factor AP2 binding to DNA by atomic force microscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23593017

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003410

1 reference

1 reference

1 reference

1 reference