(Q38855771)

7 September 2017

Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery (English)

1 reference

7 September 2017

2

David Tollervey

0 references

Jonathan Houseley

object named as

Jonathan Houseley

series ordinal

1

0 references

language of work or name

English

0 references

publication date

17 July 2011

1 reference

7 September 2017

Nucleic Acids Research

1 reference

7 September 2017

39

1 reference

7 September 2017

20

1 reference

7 September 2017

8778-8791

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

7 September 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3203602/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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A microhomology-mediated break-induced replication model for the origin of human copy number variation

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Mechanistic insights into replication termination as revealed by investigations of the Reb1-Ter3 complex of Schizosaccharomyces pombe

9 September 2017

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Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms

9 September 2017

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Budding yeast Mms22 and Mms1 regulate homologous recombination induced by replisome blockage

9 September 2017

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A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders

9 September 2017

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Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control

9 September 2017

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Break-induced replication and telomerase-independent telomere maintenance require Pol32.

9 September 2017

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

9 September 2017

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Yeast Rtt109 promotes genome stability by acetylating histone H3 on lysine 56

9 September 2017

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Replisome assembly and the direct restart of stalled replication forks

9 September 2017

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Molecular architecture of a eukaryotic DNA replication terminus-terminator protein complex

9 September 2017

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The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae

9 September 2017

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The mating type switch-activating protein Sap1 Is required for replication fork arrest at the rRNA genes of fission yeast.

9 September 2017

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The yeast histone chaperone chromatin assembly factor 1 protects against double-strand DNA-damaging agents

9 September 2017

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Reduction of nucleosome assembly during new DNA synthesis impairs both major pathways of double-strand break repair

9 September 2017

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Recombination Regulation by Transcription-Induced Cohesin Dissociation in rDNA Repeats

9 September 2017

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Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork.

9 September 2017

1 reference

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Recombination proteins in yeast

9 September 2017

1 reference

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RAD51-dependent break-induced replication in yeast

9 September 2017

1 reference

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ATR Regulates Fragile Site Stability

9 September 2017

1 reference

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Genomic rearrangements resulting in PLP1 deletion occur by nonhomologous end joining and cause different dysmyelinating phenotypes in males and females

9 September 2017

1 reference

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Characterization of RAD51-independent break-induced replication that acts preferentially with short homologous sequences

9 September 2017

1 reference

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hpr1Delta affects ribosomal DNA recombination and cell life span in Saccharomyces cerevisiae.

9 September 2017

1 reference

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Genetic requirements for RAD51- and RAD54-independent break-induced replication repair of a chromosomal double-strand break

9 September 2017

1 reference

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Two survivor pathways that allow growth in the absence of telomerase are generated by distinct telomere recombination events

9 September 2017

1 reference

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Identification of DNA cis elements essential for expansion of ribosomal DNA repeats in Saccharomyces cerevisiae

9 September 2017

1 reference

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The RCAF complex mediates chromatin assembly during DNA replication and repair

9 September 2017

1 reference

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The organization of replication and transcription

9 September 2017

1 reference

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Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I

9 September 2017

1 reference

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Role of the putative zinc finger domain of Saccharomyces cerevisiae DNA polymerase epsilon in DNA replication and the S/M checkpoint pathway

9 September 2017

1 reference

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Developmental regulation of DNA replication: replication fork barriers and programmed gene amplification in Tetrahymena thermophila

9 September 2017

1 reference

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Yeast DNA ligase IV mediates non-homologous DNA end joining

9 September 2017

1 reference

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A yeast gene product, Fob1 protein, required for both replication fork blocking and recombinational hotspot activities

9 September 2017

1 reference

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An unusual form of transcriptional silencing in yeast ribosomal DNA

9 September 2017

1 reference

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A Rad52 homolog is required for RAD51-independent mitotic recombination in Saccharomyces cerevisiae

9 September 2017

1 reference

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Double-strand break repair in the absence of RAD51 in yeast: a possible role for break-induced DNA replication

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Requirements for activity of the yeast mitotic recombination hotspot HOT1: RNA polymerase I and multiple cis-acting sequences

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Initiation and termination of DNA replication in human rRNA genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

The rRNA-encoding DNA array has an altered structure in topoisomerase I mutants of Saccharomyces cerevisiae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

The SAD1/RAD53 protein kinase controls multiple checkpoints and DNA damage-induced transcription in yeast

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

DNA polymerase epsilon links the DNA replication machinery to the S phase checkpoint

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Induction of sister chromatid exchanges at common fragile sites

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Chromosome breakage and recombination at fragile sites

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Transcription by RNA polymerase I stimulates mitotic recombination in Saccharomyces cerevisiae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Genetic control of RNA polymerase I-stimulated recombination in yeast

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

A group of interacting yeast DNA replication genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

A unique pathway of double-strand break repair operates in tandemly repeated genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

DNA length dependence of the single-strand annealing pathway and the role of Saccharomyces cerevisiae RAD59 in double-strand break repair

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Sir2p suppresses recombination of replication forks stalled at the replication fork barrier of ribosomal DNA in Saccharomyces cerevisiae.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

The absence of the yeast chromatin assembly factor Asf1 increases genomic instability and sister chromatid exchange

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Transcription termination factor reb1p causes two replication fork barriers at its cognate sites in fission yeast ribosomal DNA in vivo.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Replication fork barriers in the Xenopus rDNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Different genetic requirements for repair of replication-born double-strand breaks by sister-chromatid recombination and break-induced replication

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Conserved features in the mode of replication of eukaryotic ribosomal RNA genes

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Contrasting roles of checkpoint proteins as recombination modulators at Fob1-Ter complexes with or without fork arrest

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Genomic architecture and inheritance of human ribosomal RNA gene clusters

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Direct evidence for SIR2 modulation of chromatin structure in yeast rDNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

DNA polymerases delta and epsilon are required for chromosomal replication in Saccharomyces cerevisiae

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Cis-acting, recombination-stimulating activity in a fragment of the ribosomal DNA of S. cerevisiae

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

A replication fork barrier at the 3' end of yeast ribosomal RNA genes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Silencing in yeast rDNA chromatin: reciprocal relationship in gene expression between RNA polymerase I and II.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

Characterization of the two small subunits of Saccharomyces cerevisiae DNA polymerase delta.

22 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203602

DNA replication fork pause sites dependent on transcription

22 August 2018

1 reference

12 December 2020

Co-localization of polar replication fork barriers and rRNA transcription terminators in mouse rDNA

1 reference

12 December 2020

Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae

1 reference

12 December 2020

Ribosomal DNA replication in the fission yeast, Schizosaccharomyces pombe

1 reference

12 December 2020

Linker histone H1 represses recombination at the ribosomal DNA locus in the budding yeast Saccharomyces cerevisiae

1 reference

12 December 2020

Replication fork block protein, Fob1, acts as an rDNA region specific recombinator in S. cerevisiae

1 reference

12 December 2020

Gross Chromosomal Rearrangements and Elevated Recombination at an Inducible Site-Specific Replication Fork Barrier

1 reference

12 December 2020

Recombination-stimulating sequences in yeast ribosomal DNA correspond to sequences regulating transcription by RNA polymerase I

1 reference

12 December 2020

A redundancy of processes that cause replication fork stalling enhances recombination at two distinct sites in yeast rDNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR589

1 reference

7 September 2017

1 reference

7 September 2017

1 reference

PMCID

3203602