(Q27932247)

1 December 2016

title

Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA (English)

1 reference

DNA helicase PIF1 YML061C

1 December 2016

0 references

1 reference

GOA release 2020-03-11

3

Alicia K Byrd

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author name string

Ramanagouda Ramanagoudr-Bhojappa

1

0 references

Shubeena Chib

2

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Suja Aarattuthodiyil

4

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Manjula Pandey

5

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Smita S Patel

6

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Kevin D Raney

Journal of Biological Chemistry

7

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language of work or name

English

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publication date

31 May 2013

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published in

1 reference

describes a project that uses

1 December 2016

volume

288

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issue

22

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page(s)

16185-95

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ImageQuant

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3668774/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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The Saccharomyces Pif1p DNA helicase and the highly related Rrm3p have opposite effects on replication fork progression in ribosomal DNA.

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20 March 2017

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A single-stranded DNA binding protein required for mitochondrial DNA replication in S. cerevisiae is homologous to E. coli SSB

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Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein

29 September 2017

1 reference

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Dda helicase tightly couples translocation on single-stranded DNA to unwinding of duplex DNA: Dda is an optimally active helicase

29 September 2017

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29 September 2017

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29 September 2017

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The protease domain increases the translocation stepping efficiency of the hepatitis C virus NS3-4A helicase

29 September 2017

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29 September 2017

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Phosphate release contributes to the rate-limiting step for unwinding by an RNA helicase

29 September 2017

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Fitting enzyme kinetic data with KinTek Global Kinetic Explorer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo

29 September 2017

1 reference

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Stability and kinetics of G-quadruplex structures

29 September 2017

1 reference

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Pif1 helicase directs eukaryotic Okazaki fragments toward the two-nuclease cleavage pathway for primer removal

29 September 2017

1 reference

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Evidence for a functional dimeric form of the PcrA helicase in DNA unwinding

29 September 2017

1 reference

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The yeast Pif1p DNA helicase preferentially unwinds RNA DNA substrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Evidence suggesting that Pif1 helicase functions in DNA replication with the Dna2 helicase/nuclease and DNA polymerase delta

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Phosphate binding protein as the biorecognition element in a biosensor for phosphate

29 September 2017

1 reference

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General Methods for Analysis of Sequential “n-step” Kinetic Mechanisms: Application to Single Turnover Kinetics of Helicase-Catalyzed DNA Unwinding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

The beta-propeller protein YxaL increases the processivity of the PcrA helicase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Mitochondrial dysfunction due to oxidative mitochondrial DNA damage is reduced through cooperative actions of diverse proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Plasmid replication initiator protein RepD increases the processivity of PcrA DNA helicase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Mechanisms of helicase-catalyzed DNA unwinding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

pif mutation blocks recombination between mitochondrial rho+ and rho- genomes having tandemly arrayed repeat units in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

A PIF-dependent recombinogenic signal in the mitochondrial DNA of yeast.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Processivity of the DNA helicase activity of Escherichia coli recBCD enzyme

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668774

Multiple pathways cooperate in the suppression of genome instability in Saccharomyces cerevisiae

2 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

The role of Pif1p, a DNA helicase in Saccharomyces cerevisiae, in maintaining mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

DNA Binding Induces Dimerization of Saccharomyces cerevisiae Pif1

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

Unwinding of unnatural substrates by a DNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

Fluorescence stopped-flow studies of single turnover kinetics of E.coli RecBCD helicase-catalyzed DNA unwinding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

DNA unwinding by Escherichia coli DNA helicase I (TraI) provides evidence for a processive monomeric molecular motor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.470013

Intermediates revealed in the kinetic mechanism for DNA unwinding by a monomeric helicase

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/23596008

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M113.470013

0 references

PMC publication ID

3668774

0 references

1 reference