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Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
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PubMed
PubMed ID
17296735
retrieved
1 December 2016
title
Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
(English)
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stated in
PubMed
PubMed ID
17296735
retrieved
1 December 2016
main subject
cell biology
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DNA damage
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Histone deacetylase RPD3 YNL330C
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stated in
GOA release 2020-03-11
author name string
Vishva Mitra Sharma
series ordinal
1
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Raghuvir S Tomar
series ordinal
2
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Alison E Dempsey
series ordinal
3
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Joseph C Reese
series ordinal
4
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language of work or name
English
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publication date
April 2007
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published in
Molecular and Cellular Biology
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stated in
PubMed
PubMed ID
17296735
retrieved
1 December 2016
volume
27
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page(s)
3199-210
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issue
8
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ImageQuant
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Europe PubMed Central
retrieved
11 June 2022
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1899941/fullTextXML
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cites work
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
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PubMed Central
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20 March 2017
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
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PubMed Central
reference URL
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retrieved
20 March 2017
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism
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PubMed Central
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20 March 2017
The yeast FACT complex has a role in transcriptional initiation.
1 reference
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PubMed Central
reference URL
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20 March 2017
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
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PubMed Central
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20 March 2017
Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
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20 March 2017
The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes.
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PubMed Central
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20 March 2017
Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo.
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PubMed Central
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20 March 2017
ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS
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PubMed Central
reference URL
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20 March 2017
SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery
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PubMed Central
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20 March 2017
Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Cti6, a PHD domain protein, bridges the Cyc8-Tup1 corepressor and the SAGA coactivator to overcome repression at GAL1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Histone H3 specific acetyltransferases are essential for cell cycle progression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
20 March 2017
TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Ssn6-Tup1 interacts with class I histone deacetylases required for repression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Acetylation of histones and transcription-related factors
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
20 March 2017
NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
20 March 2017
Esa1p is an essential histone acetyltransferase required for cell cycle progression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
20 March 2017
The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
20 March 2017
Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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20 March 2017
Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
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PubMed Central
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20 March 2017
Histone acetyltransferases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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7 April 2017
Histone acetylation and transcriptional regulatory mechanisms
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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7 April 2017
Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
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PubMed Central
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7 April 2017
Genomic characterization reveals a simple histone H4 acetylation code.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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29 September 2017
Global position and recruitment of HATs and HDACs in the yeast genome.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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29 September 2017
Genome-wide analysis of the relationship between transcriptional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
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29 September 2017
Roles of SWI/SNF and HATs throughout the dynamic transcription of a yeast glucose-repressible gene
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
Histone acetylation and deacetylation in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
Targeted recruitment of Rpd3 histone deacetylase represses transcription by inhibiting recruitment of Swi/Snf, SAGA, and TATA binding protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
Histone-dependent association of Tup1-Ssn6 with repressed genes in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
Derepression of DNA damage-regulated genes requires yeast TAF(II)s
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
29 September 2017
Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
2 June 2018
Global histone acetylation and deacetylation in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
2 June 2018
Acetylation of general transcription factors by histone acetyltransferases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
2 June 2018
Yeast histone H4 N-terminal sequence is required for promoter activation in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
2 June 2018
The Saccharomyces cerevisiae GAM2/SIN3 protein plays a role in both activation and repression of transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
2 June 2018
Isolation of yeast nuclei and micrococcal nuclease mapping of nucleosome positioning.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Mapping global histone acetylation patterns to gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Functional analysis of TFIID components using conditional mutants.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Nucleosomes unfold completely at a transcriptionally active promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Requirement of Hos2 histone deacetylase for gene activity in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Genome-wide binding map of the histone deacetylase Rpd3 in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899941
retrieved
27 November 2018
Identifiers
DOI
10.1128/MCB.02311-06
1 reference
stated in
PubMed
PubMed ID
17296735
retrieved
1 December 2016
PMCID
1899941
0 references
PubMed ID
17296735
1 reference
stated in
PubMed
PubMed ID
17296735
retrieved
1 December 2016
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