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Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.
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scholarly article
1 reference
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PubMed
PubMed ID
14563679
retrieved
1 December 2016
title
Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.
(English)
1 reference
stated in
PubMed
PubMed ID
14563679
retrieved
1 December 2016
main subject
Ubiquitin-specific protease UBP8 YMR223W
1 reference
stated in
GOA release 2020-03-11
ubiquitination
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based on heuristic
inferred from title
author
Ali Shilatifard
series ordinal
8
0 references
Shelley L. Berger
object named as
Shelley L Berger
series ordinal
10
0 references
Lorraine Pillus
series ordinal
7
object named as
Lorraine Pillus
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author name string
Karl W Henry
series ordinal
1
0 references
Anastasia Wyce
series ordinal
2
0 references
Wan-Sheng Lo
series ordinal
3
0 references
Laura J Duggan
series ordinal
4
0 references
N C Tolga Emre
series ordinal
5
0 references
Cheng-Fu Kao
series ordinal
6
0 references
Mary Ann Osley
series ordinal
9
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language of work or name
English
0 references
publication date
1 November 2003
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published in
Genes & Development
1 reference
stated in
PubMed
PubMed ID
14563679
retrieved
1 December 2016
volume
17
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page(s)
2648-63
0 references
issue
21
0 references
cites work
The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p
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SALSA, a variant of yeast SAGA, contains truncated Spt7, which correlates with activated transcription
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The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex
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Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters
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The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs
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The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae
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20 March 2017
The ATM-related cofactor Tra1 is a component of the purified SAGA complex
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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
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20 March 2017
A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation
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Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex
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ADR1 activation domains contact the histone acetyltransferase GCN5 and the core transcriptional factor TFIIB.
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20 March 2017
The tandem affinity purification (TAP) method: a general procedure of protein complex purification
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20 March 2017
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
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20 March 2017
SAGA is an essential in vivo target of the yeast acidic activator Gal4p
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20 March 2017
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
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7 April 2017
Active genes are tri-methylated at K4 of histone H3
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7 April 2017
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
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7 April 2017
Dot1p modulates silencing in yeast by methylation of the nucleosome core
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7 April 2017
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast
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7 April 2017
Methylation of histone H3 Lys 4 in coding regions of active genes
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7 April 2017
Rad6-dependent ubiquitination of histone H2B in yeast
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7 April 2017
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
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7 April 2017
Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae
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29 September 2017
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
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29 September 2017
Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation
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29 September 2017
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.
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29 September 2017
Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
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29 September 2017
Gene silencing: trans-histone regulatory pathway in chromatin
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29 September 2017
Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.
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PubMed Central
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29 September 2017
HDAC's at work: everyone doing their part
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29 September 2017
The E2 ubiquitin conjugase Rad6 is required for the ArgR/Mcm1 repression of ARG1 transcription
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PubMed Central
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29 September 2017
Emerging roles of ubiquitin in transcription regulation
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29 September 2017
Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7.
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29 September 2017
Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14.
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29 September 2017
The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo
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PubMed Central
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29 September 2017
Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression
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PubMed Central
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29 September 2017
Paf1p, an RNA polymerase II-associated factor in Saccharomyces cerevisiae, may have both positive and negative roles in transcription
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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29 September 2017
Reversible histone modification and the chromosome cell cycle
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PubMed Central
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29 September 2017
TOM1p, a yeast hect-domain protein which mediates transcriptional regulation through the ADA/SAGA coactivator complexes.
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PubMed Central
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2 June 2018
The RAD6 protein of Saccharomyces cerevisiae polyubiquitinates histones, and its acidic domain mediates this activity
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PubMed Central
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2 June 2018
Ubiquitinated histone H2B is preferentially located in transcriptionally active chromatin
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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2 June 2018
Level of ubiquitinated histone H2B in chromatin is coupled to ongoing transcription
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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2 June 2018
RAD6 gene product of Saccharomyces cerevisiae requires a putative ubiquitin protein ligase (E3) for the ubiquitination of certain proteins.
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PubMed Central
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2 June 2018
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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27 November 2018
Nucleosomes unfold completely at a transcriptionally active promoter.
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PubMed Central
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27 November 2018
Requirement of Hos2 histone deacetylase for gene activity in yeast
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PubMed Central
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27 November 2018
Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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27 November 2018
Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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27 November 2018
Regulation of transcriptional activation domain function by ubiquitin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
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27 November 2018
Transcriptional activation by yeast PDR1p is inhibited by its association with NGG1p/ADA3p.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=280615
retrieved
27 November 2018
Identifiers
DOI
10.1101/GAD.1144003
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1154415
OpenCitations bibliographic resource ID
1154415
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1154415
PMCID
280615
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1154415
PubMed ID
14563679
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1154415
ResearchGate publication ID
5428531
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