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Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
scientific article
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instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
16541108
retrieved
1 December 2016
title
Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
(English)
1 reference
stated in
PubMed
PubMed ID
16541108
retrieved
1 December 2016
main subject
Saccharomyces cerevisiae
0 references
Exosome non-catalytic core subunit RRP45 YDR280W
1 reference
stated in
GOA release 2020-03-11
TRAMP complex RNA-binding subunit YDL175C
1 reference
stated in
GOA release 2020-03-11
Exosome nuclease subunit RRP6 YOR001W
1 reference
stated in
GOA release 2020-03-11
Non-canonical poly(A) polymerase PAP2 YOL115W
1 reference
stated in
GOA release 2020-03-11
ATP-dependent RNA helicase MTR4 YJL050W
1 reference
stated in
GOA release 2020-03-11
author
David Tollervey
series ordinal
3
0 references
Christophe Dez
object named as
Christophe Dez
series ordinal
1
0 references
Jonathan Houseley
object named as
Jonathan Houseley
series ordinal
2
0 references
language of work or name
English
0 references
publication date
5 April 2006
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published in
The EMBO Journal
1 reference
stated in
PubMed
PubMed ID
16541108
retrieved
1 December 2016
volume
25
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page(s)
1534-46
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issue
7
0 references
cites work
Yeast Trf5p is a nuclear poly(A) polymerase
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Trf4 and Trf5 proteins of Saccharomyces cerevisiae exhibit poly(A) RNA polymerase activity but no DNA polymerase activity
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20 March 2017
The novel ATP-binding cassette protein ARB1 is a shuttling factor that stimulates 40S and 60S ribosome biogenesis
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20 March 2017
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
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PubMed Central
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20 March 2017
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
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20 March 2017
A new yeast poly(A) polymerase complex involved in RNA quality control
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20 March 2017
5-fluorouracil enhances exosome-dependent accumulation of polyadenylated rRNAs
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20 March 2017
Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification
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Polyadenylation of rRNA in Saccharomyces cerevisiae.
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20 March 2017
The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast
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PubMed Central
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20 March 2017
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
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20 March 2017
A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits
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20 March 2017
Sequential protein association with nascent 60S ribosomal particles
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20 March 2017
Coordinated nuclear export of 60S ribosomal subunits and NMD3 in vertebrates
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20 March 2017
A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits
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PubMed Central
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20 March 2017
Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation
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PubMed Central
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20 March 2017
Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p
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20 March 2017
60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
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PubMed Central
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20 March 2017
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Requirements for the nuclear export of the small ribosomal subunit.
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20 March 2017
Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Functional organization of the yeast proteome by systematic analysis of protein complexes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Quality control of mRNA 3'-end processing is linked to the nuclear exosome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Identification of a 60S preribosomal particle that is closely linked to nuclear export.
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20 March 2017
Maturation and intranuclear transport of pre-ribosomes requires Noc proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Nuclear export of 60s ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
The Sda1 protein is required for passage through start
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PubMed Central
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20 March 2017
Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit
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PubMed Central
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20 March 2017
Factors affecting nuclear export of the 60S ribosomal subunit in vivo
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20 March 2017
Identification of a regulated pathway for nuclear pre-mRNA turnover.
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20 March 2017
Novel RING finger proteins, Air1p and Air2p, interact with Hmt1p and inhibit the arginine methylation of Npl3p.
1 reference
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PubMed Central
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20 March 2017
Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions
1 reference
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PubMed Central
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20 March 2017
Degradation of ribosomal RNA precursors by the exosome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
The Saccharomyces cerevisiae SDA1 gene is required for actin cytoskeleton organization and cell cycle progression
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PubMed Central
reference URL
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20 March 2017
Ribosome synthesis in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
1 reference
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PubMed Central
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20 March 2017
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
A generic protein purification method for protein complex characterization and proteome exploration
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Exportin 1 (Crm1p) is an essential nuclear export factor
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
A DEAD-box-family protein is required for nucleocytoplasmic transport of yeast mRNA
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Mutations in nucleolar proteins lead to nucleolar accumulation of polyA+ RNA in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
Biogenesis and nuclear export of ribosomal subunits in higher eukaryotes depend on the CRM1 export pathway
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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20 March 2017
General translational repression by activators of mRNA decapping
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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7 April 2017
Ribosome assembly in eukaryotes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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7 April 2017
The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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7 April 2017
Comparison of ARM and HEAT protein repeats
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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7 April 2017
Localization of ASH1 mRNA particles in living yeast
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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7 April 2017
A nuclear surveillance pathway for mRNAs with defective polyadenylation.
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29 September 2017
Ribosome synthesis meets the cell cycle
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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29 September 2017
Expression and localization studies of hSDA, the human ortholog of the yeast SDA1 gene.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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29 September 2017
Characterization of Ran-driven cargo transport and the RanGTPase system by kinetic measurements and computer simulation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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29 September 2017
The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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29 September 2017
The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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29 September 2017
Isolation and characterization of Saccharomyces cerevisiae mRNA transport-defective (mtr) mutants
1 reference
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29 September 2017
Isolation and sequencing of NOP1. A yeast gene encoding a nucleolar protein homologous to a human autoimmune antigen
1 reference
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PubMed Central
reference URL
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29 September 2017
Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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29 September 2017
The NES-Crm1p export pathway is not a major mRNA export route in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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2 June 2018
Expression and Localization Studies of hSDA, the Human Ortholog of the Yeast SDA1 Gene
1 reference
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Crossref
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https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601035
retrieved
21 January 2018
The Noc proteins involved in ribosome synthesis and export contain divergent HEAT repeats.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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27 November 2018
Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440318
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27 November 2018
The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16541108
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/SJ.EMBOJ.7601035
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PMCID
1440318
0 references
PubMed ID
16541108
1 reference
stated in
PubMed
PubMed ID
16541108
retrieved
1 December 2016
ResearchGate publication ID
7237771
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