(Q27936430)

1 December 2016

title

Dynamic reprogramming of transcription factors to and from the subtelomere (English)

1 reference

1 December 2016

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GOA release 2020-03-11

3

Trey Ideker

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Lorraine Pillus

series ordinal

2

object named as

Lorraine Pillus

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author name string

H Craig Mak

series ordinal

1

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language of work or name

English

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publication date

June 2009

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1 reference

describes a project that uses

1 December 2016

volume

19

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issue

6

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page(s)

1014-25

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Cytoscape

1 reference

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

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A novel membrane protein capable of binding the Na+/H+ antiporter (Nha1p) enhances the salinity-resistant cell growth of Saccharomyces cerevisiae

20 March 2017

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20 March 2017

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Genomic gene clustering analysis of pathways in eukaryotes

20 March 2017

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Evidence for large domains of similarly expressed genes in the Drosophila genome

20 March 2017

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Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases

20 March 2017

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ATF/CREB sites present in sub-telomeric regions of Saccharomyces cerevisiae chromosomes are part of promoters and act as UAS/URS of highly conserved COS genes

20 March 2017

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Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast.

20 March 2017

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Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

20 March 2017

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Aft2p, a novel iron-regulated transcription activator that modulates, with Aft1p, intracellular iron use and resistance to oxidative stress in yeast

20 March 2017

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Genomic expression programs in the response of yeast cells to environmental changes

20 March 2017

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Y'-Help1, a DNA helicase encoded by the yeast subtelomeric Y' element, is induced in survivors defective for telomerase.

20 March 2017

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Localization of RAP1 and topoisomerase II in nuclei and meiotic chromosomes of yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

THE COMPLEX STRUCTURE AND DYNAMIC EVOLUTION OF HUMAN SUBTELOMERES

20 March 2017

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Java Treeview--extensible visualization of microarray data

7 April 2017

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Open source clustering software

7 April 2017

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A genome-wide transcriptional analysis of the mitotic cell cycle

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Heterochromatin revisited

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

7 April 2017

1 reference

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The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Methylation of histone H3 Lys 4 in coding regions of active genes

7 April 2017

1 reference

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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

1 reference

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The human transcriptome map: clustering of highly expressed genes in chromosomal domains

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Coupling and coordination in gene expression processes: a systems biology view

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Dynamics and interplay of nuclear architecture, genome organization, and gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Gene regulation through nuclear organization.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Genetic reconstruction of a functional transcriptional regulatory network

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Chromosome ends: different sequences may provide conserved functions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Gene order and dynamic domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

The evolutionary dynamics of eukaryotic gene order

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Which end: dissecting Ku's function at telomeres and double-strand breaks: Figure 1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Nitrogen regulation in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Regulation of adjacent yeast genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

The chromosome ends of Saccharomyces cerevisiae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Inferring condition-specific transcription factor function from DNA binding and gene expression data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Expression of the HXT13, HXT15 and HXT17 genes in Saccharomyces cerevisiae and stabilization of the HXT1 gene transcript by sugar-induced osmotic stress

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Regulation of subtelomeric silencing during stress response.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2694488

Silencing of genes at nontelomeric sites in yeast is controlled by sequestration of silencing factors at telomeres by Rap 1 protein

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19372386

12 December 2020

inferred from PubMed ID database lookup

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/19372386

12 December 2020

inferred from PubMed ID database lookup

Saccharomyces cerevisiae PAU genes are induced by anaerobiosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19372386

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.084178.108

0 references

PMC publication ID

2694488

0 references

1 reference