(Q27936450)

1 December 2016

title

DEAD-box protein facilitated RNA folding in vivo (English)

1 reference

ATP-dependent RNA helicase YDR194C

1 December 2016

0 references

0 references

1 reference

GOA release 2020-03-11

author name string

Andreas Liebeg

series ordinal

1

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Oliver Mayer

series ordinal

2

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Christina Waldsich

series ordinal

3

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language of work or name

English

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publication date

2010

1 reference

November 2010

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21045551

full work available at URL

19 August 2024

https://www.tandfonline.com/doi/pdf/10.4161/rna.7.6.13484?needAccess=true

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21045551

https://europepmc.org/articles/PMC3073338

19 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21045551

https://europepmc.org/articles/PMC3073338?pdf=render

19 August 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21045551

https://doi.org/10.4161/rna.7.6.13484

19 August 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21045551

19 August 2024

1 reference

describes a project that uses

1 December 2016

volume

7

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issue

6

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page(s)

803-11

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ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3073338/fullTextXML

inferred from PubMed Central ID database lookup

cites work

ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Structural basis for exon recognition by a group II intron

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Crystal Structure of a Self-Spliced Group II Intron

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

An obligate intermediate along the slow folding pathway of a group II intron ribozyme

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Crystal structure of a group I ribozyme domain: principles of RNA packing

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Frequent use of the same tertiary motif by self-folding RNAs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Mitochondrial splicing requires a protein from a novel helicase family

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Group II introns: structure and catalytic versatility of large natural ribozymes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Mitochondrial Mg(2+) homeostasis is critical for group II intron splicing in vivo

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Comparative and functional anatomy of group II catalytic introns—a review

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

The DEAD-box protein family of RNA helicases

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Dual roles for the Mss116 cofactor during splicing of the ai5γ group II intron

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

The ribozyme core of group II introns: a structure in want of partners

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Single-molecule studies of group II intron ribozymes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Kinetic barriers and the role of topology in protein and RNA folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

A conserved element that stabilizes the group II intron active site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Three essential and conserved regions of the group II intron are proximal to the 5'-splice site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

DEAD-box proteins unwind duplexes by local strand separation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Do DEAD-box proteins promote group II intron splicing without unwinding RNA?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Folding of group II introns: a model system for large, multidomain RNAs?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Linking the group II intron catalytic domains: tertiary contacts and structural features of domain 3.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Metal ions and RNA folding: a highly charged topic with a dynamic future

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Monitoring intermediate folding states of the td group I intron in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Beyond kinetic traps in RNA folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Visualizing the solvent-inaccessible core of a group II intron ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

A tertiary interaction that links active-site domains to the 5' splice site of a group II intron

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Use of dimethyl sulfate to probe RNA structure in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Probing RNA structure and RNA-ligand complexes with chemical probes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2+ ions in the tertiary structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

An RNA conformational change between the two chemical steps of group II self-splicing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Structure and activities of group II introns

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Construction of a yeast strain devoid of mitochondrial introns and its use to screen nuclear genes involved in mitochondrial splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Group II introns deleted for multiple substructures retain self-splicing activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Protein-facilitated folding of group II intron ribozymes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

The linear form of a group II intron catalyzes efficient autocatalytic reverse splicing, establishing a potential for mobility

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Group II intron folding under near-physiological conditions: collapsing to the near-native state

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Kinetics of hairpin ribozyme cleavage in yeast.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Multiple tertiary interactions involving domain II of group II self-splicing introns.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Base-pairing interactions involving the 5' and 3'-terminal nucleotides of group II self-splicing introns

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast

2 June 2018

1 reference

https://api.crossref.org/works/10.4161%2FRNA.7.6.13484

Productive folding to the native state by a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FRNA.7.6.13484

A kinetic intermediate that regulates proper folding of a group II intron RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FRNA.7.6.13484

Probing RNA structure within living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FRNA.7.6.13484

An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FRNA.7.6.13484

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FRNA.7.6.13484

Group II intron splicing in vivo by first-step hydrolysis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3073338

The receptor for branch-site docking within a group II intron active site

27 November 2018

1 reference

12 December 2020

A DEAD protein that activates intron self-splicing without unwinding RNA

1 reference

12 December 2020

A folding control element for tertiary collapse of a group II intron ribozyme

1 reference

12 December 2020

The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics

1 reference

12 December 2020

Hairpin ribozymes with four-way helical junctions mediate intracellular RNA ligation

1 reference

12 December 2020

The architectural organization and mechanistic function of group II intron structural elements

1 reference

12 December 2020

Domains 2 and 3 interact to form critical elements of the group II intron active site

1 reference

12 December 2020

Identifiers

DOI

10.4161/RNA.7.6.13484

0 references

PMC publication ID

3073338

0 references

1 reference