(Q27938034)

22751016

1 December 2016

title

Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening (English)

1 reference

PubMed

transcription preinitiation complex

1 December 2016

0 references

1 reference

Gene Ontology release 2020-05-02

Gene Ontology ID

GO:0097550

Transcription factor TFIIE subunit TFA1 YKL028W

1 reference

Transcription factor TFIIB YPR086W

1 reference

TFIIH/NER complex ATPase/helicase subunit SSL2 YIL143C

1 reference

Transcription factor TFIIE subunit TFA2 YKR062W

1 reference

Nature Structural & Molecular Biology

author name string

Sebastian Grünberg

series ordinal

1

0 references

Linda Warfield

series ordinal

2

0 references

Steven Hahn

series ordinal

3

0 references

language of work or name

English

0 references

publication date

August 2012

0 references

published in

1 reference

PubMed

22751016

Initiation Complex Structure and Promoter Proofreading

1 December 2016

volume

19

0 references

issue

8

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page(s)

788-96

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cites work

1 reference

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Molecular basis of RNA polymerase III transcription repression by Maf1

20 March 2017

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RNA polymerase I contains a TFIIF-related DNA-binding subcomplex

20 March 2017

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Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

20 March 2017

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Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex

20 March 2017

1 reference

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Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

20 March 2017

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RNA polymerase II-TFIIB structure and mechanism of transcription initiation

20 March 2017

1 reference

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The putative DNA-binding protein Sto12a from the thermoacidophilic archaeon Sulfolobus tokodaii contains intrachain and interchain disulfide bonds

20 March 2017

1 reference

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MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

20 March 2017

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Structure and oligomeric state of human transcription factor TFIIE

20 March 2017

1 reference

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The HHpred interactive server for protein homology detection and structure prediction

20 March 2017

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Stimulation of the XPB ATP-dependent helicase by the beta subunit of TFIIE

20 March 2017

1 reference

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An extended winged helix domain in general transcription factor E/IIE alpha

20 March 2017

1 reference

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Helicase structure and mechanism

20 March 2017

1 reference

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Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface

20 March 2017

1 reference

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Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB.

20 March 2017

1 reference

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Three transitions in the RNA polymerase II transcription complex during initiation

20 March 2017

1 reference

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Genetic analysis of the large subunit of yeast transcription factor IIE reveals two regions with distinct functions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Promoter structure-dependent functioning of the general transcription factor IIE in Saccharomyces cerevisiae

20 March 2017

1 reference

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Yeast TFIIE. Cloning, expression, and homology to vertebrate proteins.

20 March 2017

1 reference

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An expanded eukaryotic genetic code

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Mechanism of ATP-dependent promoter melting by transcription factor IIH

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Conservation between the RNA polymerase I, II, and III transcription initiation machineries

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Mutations in the XPD helicase gene result in XP and TTD phenotypes, preventing interaction between XPD and the p44 subunit of TFIIH

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Assessment of protein models with three-dimensional profiles

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Polymerase II promoter activation: closed complex formation and ATP-driven start site opening

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

The many faces of the helix-turn-helix domain: transcription regulation and beyond

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Verification of protein structures: patterns of nonbonded atomic interactions

7 April 2017

1 reference

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Protein structure modeling with MODELLER

7 April 2017

1 reference

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Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

7 April 2017

1 reference

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Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators.

29 September 2017

1 reference

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Mechanism of start site selection by RNA polymerase II: interplay between TFIIB and Ssl2/XPB helicase subunit of TFIIH

29 September 2017

1 reference

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An integrated chemical cross-linking and mass spectrometry approach to study protein complex architecture and function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

The TFIIF-like Rpc37/53 dimer lies at the center of a protein network to connect TFIIIC, Bdp1, and the RNA polymerase III active center

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Evolution of multisubunit RNA polymerases in the three domains of life.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Central forkhead domain of human TFIIE beta plays a primary role in binding double-stranded DNA at transcription initiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

The general transcription machinery and general cofactors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Localization of the yeast RNA polymerase I-specific subunits

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Mutations in XPB and XPD helicases found in xeroderma pigmentosum patients impair the transcription function of TFIIH.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Analysis of the role of TFIIE in basal transcription and TFIIH-mediated carboxy-terminal domain phosphorylation through structure-function studies of TFIIE-alpha

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Multiple functions of general transcription factors TFIIE and TFIIH in transcription: possible points of regulation by trans-acting factors

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Dual role of the C34 subunit of RNA polymerase III in transcription initiation.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

A heteroduplex template circumvents the energetic requirement for ATP during activated transcription by RNA polymerase II.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3414687

Transcription factor E is a part of transcription elongation complexes

2 June 2018

1 reference

TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape

21 January 2018

1 reference

Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIEbeta subunit

21 January 2018

1 reference

Dynamic Architecture of a Minimal RNA Polymerase II Open Promoter Complex

21 January 2018

1 reference

Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex

21 January 2018

1 reference

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

31 March 2020

1 reference

The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2334

1 reference

Dimensions Publication ID

1003871257

0 references

1 reference

1 reference

22751016

1 reference