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Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes
scientific article
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instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
17948059
retrieved
1 December 2016
title
Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes
(English)
1 reference
stated in
PubMed
PubMed ID
17948059
retrieved
1 December 2016
main subject
regulation of histone H3-K36 trimethylation
1 reference
stated in
Gene Ontology release 2020-05-02
Gene Ontology ID
GO:2001253
negative regulation of histone H3-K36 trimethylation
1 reference
stated in
Gene Ontology release 2020-05-02
Gene Ontology ID
GO:2001254
histone H3-K36 trimethylation
1 reference
stated in
Gene Ontology release 2020-05-02
Gene Ontology ID
GO:0097198
positive regulation of histone H3-K36 trimethylation
1 reference
stated in
Gene Ontology release 2020-05-02
Gene Ontology ID
GO:2001255
Paf1p YBR279W
1 reference
stated in
GOA release 2020-03-11
Cdc73p YLR418C
1 reference
stated in
GOA release 2020-03-11
Ctr9p YOL145C
1 reference
stated in
GOA release 2020-03-11
author name string
Yaya Chu
series ordinal
1
0 references
Rajna Simic
series ordinal
2
0 references
Marcie H Warner
series ordinal
3
0 references
Karen M Arndt
series ordinal
4
0 references
Gregory Prelich
series ordinal
5
0 references
language of work or name
English
0 references
publication date
14 November 2007
0 references
published in
The EMBO Journal
1 reference
stated in
PubMed
PubMed ID
17948059
retrieved
1 December 2016
volume
26
0 references
page(s)
4646-56
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issue
22
0 references
cites work
The role of chromatin during transcription
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Chromatin modifications and their function
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PubMed Central
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20 March 2017
Opposing roles for Set2 and yFACT in regulating TBP binding at promoters
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PubMed Central
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20 March 2017
The Spt4p subunit of yeast DSIF stimulates association of the Paf1 complex with elongating RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Evidence that Spt2/Sin1, an HMG-like factor, plays roles in transcription elongation, chromatin structure, and genome stability in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
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PubMed Central
reference URL
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20 March 2017
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
1 reference
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PubMed Central
reference URL
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20 March 2017
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae
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PubMed Central
reference URL
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20 March 2017
BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Histone H2B ubiquitylation is associated with elongating RNA polymerase II
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
The Paf1 complex has functions independent of actively transcribing RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Bur1 kinase is required for efficient transcription elongation by RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Transcription elongation factors repress transcription initiation from cryptic sites.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
retrieved
20 March 2017
The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach
1 reference
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PubMed Central
reference URL
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20 March 2017
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
The Paf1 complex physically and functionally associates with transcription elongation factors in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Phosphorylation of the RNA polymerase II carboxy-terminal domain by the Bur1 cyclin-dependent kinase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
BUR1 and BUR2 encode a divergent cyclin-dependent kinase-cyclin complex important for transcription in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Activation of CLN1 and CLN2 G1 cyclin gene expression by BCK2
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PubMed Central
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20 March 2017
Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines
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PubMed Central
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20 March 2017
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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20 March 2017
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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7 April 2017
Genome-wide map of nucleosome acetylation and methylation in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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7 April 2017
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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7 April 2017
Histone and chromatin cross-talk
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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7 April 2017
Alteration of nucleosome structure as a mechanism of transcriptional regulation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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7 April 2017
The BUR1 cyclin-dependent protein kinase is required for the normal pattern of histone methylation by SET2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
retrieved
29 September 2017
The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
retrieved
29 September 2017
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Transcript elongation on a nucleoprotein template
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Synthetic lethal interactions suggest a role for the Saccharomyces cerevisiae Rtf1 protein in transcription elongation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Identification of RTF1, a novel gene important for TATA site selection by TATA box-binding protein in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 "tail" to DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone H3 in repressing transcription in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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29 September 2017
Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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2 June 2018
Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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2 June 2018
Isolation and characterization of two genes encoding yeast mating pheromone signaling elements: CDC72 and CDC73.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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2 June 2018
Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
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27 November 2018
Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2080810
retrieved
27 November 2018
SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17948059
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601887
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1038/SJ.EMBOJ.7601887
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PMCID
2080810
0 references
PubMed ID
17948059
1 reference
stated in
PubMed
PubMed ID
17948059
retrieved
1 December 2016
ResearchGate publication ID
5897721
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