(Q27975982)

English

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

scientific article (publication date: 21 August 2010)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows

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scholarly article

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The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium* (English)

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interoperability

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based on heuristic

inferred from title

DBCLS BioHackathon

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1 reference

based on heuristic

inferred from title

19

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41

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29

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Evangelos Pafilis

39

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Florian Reisinger

43

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Heikki Lehväslaiho

object named as

Heikki Lehvaslaiho

30

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Christian M Zmasek

object named as

Christian M Zmasek

55

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Richard Holland

object named as

Richard Holland

22

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Arnaud Kerhornou

object named as

Arnaud Kerhornou

25

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Alex Gutteridge

object named as

Alex Gutteridge

21

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Shuichi Kawashima

object named as

Shuichi Kawashima

8

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Atsuko Yamaguchi

object named as

Atsuko Yamaguchi

7

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José M. Fernández

object named as

José M Fernández

16

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Kiyoko F Aoki-Kinoshita

object named as

Kiyoko F Aoki-Kinoshita

5

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object named as

Rutger A Vos

52

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Akira Funahashi

object named as

Akira Funahashi

17

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Oswaldo Trelles

object named as

Oswaldo Trelles

51

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Mark D. Wilkinson

object named as

Mark D Wilkinson

53

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Yasukazu Nakamura

object named as

Yasukazu Nakamura

32

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Richard Bruskiewich

14

object named as

Richard Bruskiewich

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Toshiaki Katayama

1

object named as

Toshiaki Katayama

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18

object named as

Paul Mk Gordon

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Łukasz Salwiński

44

object named as

Lukasz Salwinski

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4

object named as

Keiichiro Ono

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Yasunori Yamamoto

6

object named as

Yasunori Yamamoto

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11

object named as

Bruno Aranda

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author name string

Kazuharu Arakawa

2

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Mitsuteru Nakao

3

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Hong-Woo Chun

9

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Jan Aerts

10

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Lord Hendrix Barboza

12

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Raoul Jp Bonnal

13

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Jan C Bryne

15

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Andreas Groscurth

20

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Yoshinobu Kano

23

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Edward A Kawas

24

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Eri Kibukawa

26

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Akira R Kinjo

27

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Michael Kuhn

28

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Hiroyuki Nakamura

31

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Tatsuya Nishizawa

33

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Chikashi Nobata

34

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Tamotsu Noguchi

35

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Thomas M Oinn

36

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Shinobu Okamoto

37

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Stuart Owen

38

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Matthew Pocock

40

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René Ranzinger

42

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Mark Schreiber

45

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Martin Senger

46

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Yasumasa Shigemoto

47

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Daron M Standley

48

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Hideaki Sugawara

49

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Toshiyuki Tashiro

50

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William York

54

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Kiyoshi Asai

56

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Toshihisa Takagi

57

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language of work or name

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publication date

21 August 2010

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Journal of Biomedical Semantics

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1

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1

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8

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describes a project that uses

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

BioRuby: bioinformatics software for the Ruby programming language

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

phyloXML: XML for evolutionary biology and comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

Biopython: freely available Python tools for computational molecular biology and bioinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

BioJava: an open-source framework for bioinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

Protein structure databases with new web services for structural biology and biomedical research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

KEGG for linking genomes to life and the environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

STRING 7--recent developments in the integration and prediction of protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

The Bioperl toolkit: Perl modules for the life sciences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

The distributed annotation system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

NEXUS: an extensible file format for systematic information

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Taverna: a tool for building and running workflows of services

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

The Database of Interacting Proteins: 2004 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

STITCH: interaction networks of chemicals and proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

The IntAct molecular interaction database in 2010

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

Integration of biological networks and gene expression data using Cytoscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

Web services at the European bioinformatics institute

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

iHOP web services

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

20 March 2017

TimeTree: a public knowledge-base of divergence times among organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

7 April 2017

Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

7 April 2017

IntAct--open source resource for molecular interaction data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

7 April 2017

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

7 April 2017

TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

DDBJ dealing with mass data produced by the second generation sequencer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Introducing meta-services for biomedical information extraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Experience using web services for biological sequence analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Text processing through Web services: calling Whatizit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

DDBJ with new system and face

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Seahawk: moving beyond HTML in Web-based bioinformatics analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Representing, storing and accessing molecular interaction data: a review of models and tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Open source tools and toolkits for bioinformatics: significance, and where are we?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Globally distributed object identification for biological knowledgebases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

DDBJ in the stream of various biological data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Bioinformatics in glycobiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

BioMOBY: an open source biological web services proposal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

The EBI SRS server--recent developments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

29 September 2017

Intelligent client for integrating bioinformatics services

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

27 November 2018

Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

27 November 2018

LINUCS: linear notation for unique description of carbohydrate sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

27 November 2018

DBGET/LinkDB: an integrated database retrieval system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939597

27 November 2018

Creating a bioinformatics nation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20727200

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/2041-1480-1-8

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/biomedsem/KatayamaAN10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/2041-1480-1-8

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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