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The selection and function of cell type-specific enhancers
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Europe PubMed Central
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4517609
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
review article
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title
The selection and function of cell type-specific enhancers
(English)
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PubMed
stated in
Europe PubMed Central
PMC publication ID
4517609
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
author
Sven Heinz
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1
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Europe PubMed Central
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4517609
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
Chris Benner
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3
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Europe PubMed Central
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4517609
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
Christopher K Glass
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4
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4517609
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
author name string
Casey E Romanoski
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2
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29 February 2020
language of work or name
English
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4 February 2015
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retrieved
29 February 2020
published in
Nature Reviews Molecular Cell Biology
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PubMed
stated in
Europe PubMed Central
PMC publication ID
4517609
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
volume
16
2 references
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PubMed
stated in
Europe PubMed Central
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4517609
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29 February 2020
issue
3
2 references
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PubMed
stated in
Europe PubMed Central
PMC publication ID
4517609
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
page(s)
144-154
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Europe PubMed Central
PMC publication ID
4517609
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Modification of enhancer chromatin: what, how, and why?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Chromatin marks identify critical cell types for fine mapping complex trait variants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
STATs shape the active enhancer landscape of T cell populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Linking disease associations with regulatory information in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
DNase I sensitivity QTLs are a major determinant of human expression variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Dissecting the regulatory architecture of gene expression QTLs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Intragenic enhancers act as alternative promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Lineage regulators direct BMP and Wnt pathways to cell-specific programs during differentiation and regeneration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Multilineage priming of enhancer repertoires precedes commitment to the B and myeloid cell lineages in hematopoietic progenitors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Serum response factor utilizes distinct promoter- and enhancer-based mechanisms to regulate cytoskeletal gene expression in macrophages
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Variation in transcription factor binding among humans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
A CTCF-independent role for cohesin in tissue-specific transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Nucleosome dynamics define transcriptional enhancers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
A map of open chromatin in human pancreatic islets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Pioneer factors, genetic competence, and inductive signaling: programming liver and pancreas progenitors from the endoderm
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Shadow enhancers as a source of evolutionary novelty
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Histone H3 Lys 4 methylation: caught in a bind?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Chromosome territories--a functional nuclear landscape.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Transcriptional regulation of the SCL locus: identification of an enhancer that targets the primitive erythroid lineage in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
The mediator of RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
The scl +18/19 stem cell enhancer is not required for hematopoiesis: identification of a 5' bifunctional hematopoietic-endothelial enhancer bound by Fli-1 and Elf-1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Spatial organization of gene expression: the active chromatin hub.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Rearrangement of chromatin domains during development in Xenopus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Tissue-specific factors additively increase the probability of the all-or-none formation of a hypersensitive site.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
29 September 2017
Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
2 June 2018
Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
2 June 2018
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
2 June 2018
Shadow enhancers: frequently asked questions about distributed cis-regulatory information and enhancer redundancy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
2 June 2018
Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
2 June 2018
Enhancer loops appear stable during development and are associated with paused polymerase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Latent enhancers activated by stimulation in differentiated cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
First exon length controls active chromatin signatures and transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
DNA-binding factors shape the mouse methylome at distal regulatory regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Acute myeloid leukemia induced by graded reduction of a lineage-specific transcription factor, PU.1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
An SCL 3' enhancer targets developing endothelium together with embryonic and adult haematopoietic progenitors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Requirement of transcription factor PU.1 in the development of multiple hematopoietic lineages.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4517609
retrieved
27 November 2018
Identifiers
DOI
10.1038/NRM3949
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1127796
stated in
Europe PubMed Central
PMC publication ID
4517609
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
Dimensions Publication ID
1046216116
0 references
OpenCitations bibliographic resource ID
1127796
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1127796
PMC publication ID
4517609
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1127796
stated in
Europe PubMed Central
PMC publication ID
4517609
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PubMed publication ID
25650801
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1127796
stated in
Europe PubMed Central
PMC publication ID
4517609
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25650801%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
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