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Enzyme dynamics from NMR spectroscopy
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19 September 2019
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PubMed
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28 September 2019
title
Enzyme dynamics from NMR spectroscopy
(English)
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PubMed
main subject
biomedical investigative technique
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PubMed
retrieved
19 September 2019
enzyme
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PubMed
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28 September 2019
spectroscopy
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NMR spectroscopy
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author name string
Arthur G. Palmer
series ordinal
1
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Crossref
language of work or name
English
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PubMed
publication date
17 February 2015
3 references
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PubMed
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PubMed Central
retrieved
19 September 2019
stated in
PubMed Central
retrieved
28 September 2019
published in
Accounts of Chemical Research
3 references
stated in
PubMed
stated in
PubMed Central
retrieved
19 September 2019
stated in
PubMed Central
retrieved
28 September 2019
volume
48
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PubMed
issue
2
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PubMed
page(s)
457-65
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PubMed
cites work
Seeing the invisible by paramagnetic and diamagnetic NMR
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Evidence for dynamics in proteins as a mechanism for ligand dissociation
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PubMed Central
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Protein conformational dynamics in the mechanism of HIV-1 protease catalysis
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PubMed Central
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20 March 2017
Structure and dynamics of a molten globular enzyme
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PubMed Central
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20 March 2017
Solution-state NMR investigations of triosephosphate isomerase active site loop motion: ligand release in relation to active site loop dynamics
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PubMed Central
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20 March 2017
Crystallographic analysis of the complex between triosephosphate isomerase and 2-phosphoglycolate at 2.5-A resolution: implications for catalysis
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20 March 2017
Structure of yeast triosephosphate isomerase at 1.9-A resolution
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20 March 2017
Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
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PubMed Central
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20 March 2017
Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB
1 reference
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PubMed Central
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20 March 2017
Enzyme catalysis: not different, just better
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PubMed Central
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20 March 2017
Structure and dynamics of the G121V dihydrofolate reductase mutant: lessons from a transition-state inhibitor complex
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PubMed Central
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20 March 2017
Thermal adaptation of conformational dynamics in ribonuclease H
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PubMed Central
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20 March 2017
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
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PubMed Central
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7 April 2017
Intrinsic dynamics of an enzyme underlies catalysis
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PubMed Central
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7 April 2017
Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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7 April 2017
AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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7 April 2017
Protein dynamics control the progression and efficiency of the catalytic reaction cycle of the Escherichia coli DNA-repair enzyme AlkB
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Chemical exchange in biomacromolecules: past, present, and future
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PubMed Central
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29 September 2017
Tracing an allosteric pathway regulating the activity of the HslV protease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
The linker between the dimerization and catalytic domains of the CheA histidine kinase propagates changes in structure and dynamics that are important for enzymatic activity
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Unraveling the role of protein dynamics in dihydrofolate reductase catalysis
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Role of conformational entropy in the activity and regulation of the catalytic subunit of protein kinase A.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
NMR relaxation in proteins with fast internal motions and slow conformational exchange: model-free framework and Markov state simulations
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Differential Flap Dynamics in Wild-type and a Drug Resistant Variant of HIV-1 Protease Revealed by Molecular Dynamics and NMR Relaxation.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
The use of residual dipolar coupling in studying proteins by NMR.
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PubMed Central
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29 September 2017
Multiplet-filtered and gradient-selected zero-quantum TROSY experiments for 13C1H3 methyl groups in proteins
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PubMed Central
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29 September 2017
NMR relaxation unravels interdomain crosstalk of the two domain prolyl isomerase and chaperone SlyD.
1 reference
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PubMed Central
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29 September 2017
Millisecond timescale fluctuations in dihydrofolate reductase are exquisitely sensitive to the bound ligands
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Intrinsic domain and loop dynamics commensurate with catalytic turnover in an induced-fit enzyme.
1 reference
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PubMed Central
reference URL
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29 September 2017
Conformational relaxation following hydride transfer plays a limiting role in dihydrofolate reductase catalysis
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Characterization of enzyme motions by solution NMR relaxation dispersion.
1 reference
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PubMed Central
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29 September 2017
An inserted Gly residue fine tunes dynamics between mesophilic and thermophilic ribonucleases H
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy
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PubMed Central
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29 September 2017
Hydrogen exchange methods to study protein folding
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PubMed Central
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29 September 2017
The loop opening/closing motion of the enzyme triosephosphate isomerase
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Crystallographic binding studies with triosephosphate isomerases: Conformational changes induced by substrate and substrate-analogues
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4334254
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29 September 2017
Interpreting protein structural dynamics from NMR chemical shifts
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PubMed Central
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2 June 2018
Toward flexibility-activity relationships by NMR spectroscopy: dynamics of Pin1 ligands
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2 June 2018
Changes in protein dynamics of the DNA repair dioxygenase AlkB upon binding of Fe(2+) and 2-oxoglutarate.
1 reference
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PubMed Central
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27 November 2018
R(1rho) relaxation for two-site chemical exchange: general approximations and some exact solutions.
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27 November 2018
Enzyme dynamics during catalysis measured by NMR spectroscopy
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27 November 2018
Mapping chemical exchange in proteins with MW > 50 kD.
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27 November 2018
Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair
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PubMed Central
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27 November 2018
Multiple time scale backbone dynamics of homologous thermophilic and mesophilic ribonuclease HI enzymes
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PubMed Central
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27 November 2018
Hydrogen-exchange strategies applied to energetics of intermediate processes in protein folding
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27 November 2018
Domain flexibility in ligand-free and inhibitor-bound Escherichia coli adenylate kinase based on a mode-coupling analysis of 15N spin relaxation
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27 November 2018
R1rho relaxation outside of the fast-exchange limit.
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27 November 2018
The time scale of the catalytic loop motion in triosephosphate isomerase
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PubMed Central
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27 November 2018
Probing side-chain dynamics in the proteasome by relaxation violated coherence transfer NMR spectroscopy
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/25574774
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Solution NMR and computer simulation studies of active site loop motion in triosephosphate isomerase
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25574774
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A diverse view of protein dynamics from NMR studies of HIV-1 protease flaps
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25574774
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Dissecting the microscopic steps of the cyclophilin A enzymatic cycle on the biological HIV-1 capsid substrate by NMR
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25574774
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1021/AR500340A
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3669171
OpenCitations bibliographic resource ID
3669171
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3669171
PMC publication ID
4334254
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3669171
PubMed publication ID
25574774
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3669171
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