(Q28109324)

27801646

26 June 2017

title

Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm (English)

1 reference

27801646

26 June 2017

main subject

macromolecular structure

0 references

1 reference

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Michael Feig

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Isseki Yu

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Takaharu Mori

2

1 reference

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4 June 2020

Tadashi Ando

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Ryuhei Harada

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Jaewoon Jung

5

1 reference

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4 June 2020

language of work or name

English

0 references

publication date

1 November 2016

1 reference

26 June 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

Crowding Induced Entropy-Enthalpy Compensation in Protein Association Equilibria

4 June 2020

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Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

20 March 2017

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Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media

20 March 2017

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

20 March 2017

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Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

22 April 2017

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Transient binding accounts for apparent violation of the generalized Stokes-Einstein relation in crowded protein solutions

7 April 2017

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Coupling and Decoupling of Rotational and Translational Diffusion of Proteins under Crowding Conditions

9 May 2017

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Challenges in structural approaches to cell modeling

29 September 2017

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GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations.

29 September 2017

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Complete atomistic model of a bacterial cytoplasm for integrating physics, biochemistry, and systems biology.

29 September 2017

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Quinary structure modulates protein stability in cells.

29 September 2017

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Are current atomistic force fields accurate enough to study proteins in crowded environments?

29 September 2017

1 reference

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CASP10 results compared to those of previous CASP experiments

29 September 2017

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Reaching new levels of realism in modeling biological macromolecules in cellular environments

29 September 2017

1 reference

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Reduced native state stability in crowded cellular environment due to protein-protein interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5089862

Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5089862

Temperature dependence of protein folding kinetics in living cells

29 September 2017

1 reference

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Variable interactions between protein crowders and biomolecular solutes are important in understanding cellular crowding

29 September 2017

1 reference

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Protein self-diffusion in crowded solutions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5089862

A new view of the bacterial cytosol environment

29 September 2017

1 reference

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Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

29 September 2017

1 reference

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Protein folding stability and dynamics imaged in a living cell

29 September 2017

1 reference

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Evaluating rotational diffusion from protein MD simulations

29 September 2017

1 reference

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Conformational sampling of peptides in cellular environments

29 September 2017

1 reference

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29 September 2017

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29 September 2017

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29 September 2017

1 reference

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Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

29 September 2017

1 reference

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Protein crowding affects hydration structure and dynamics.

29 September 2017

1 reference

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Size dependence of protein diffusion in the cytoplasm of Escherichia coli

2 June 2018

1 reference

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Anomalous diffusion of proteins due to molecular crowding.

2 June 2018

1 reference

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Interaction between particles suspended in solutions of macromolecules

2 June 2018

1 reference

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Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

Dynamic simulation of hydrodynamically interacting particles

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

Interactions between glycolytic enzymes of Mycoplasma pneumoniae

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

Macromolecular crowding remodels the energy landscape of a protein by favoring a more compact unfolded state

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

High-resolution multi-dimensional NMR spectroscopy of proteins in human cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

Electrochemical structure of the crowded cytoplasm

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

Weak Interactions between Folate and Osmolytes in Solution

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.19274

21 January 2018

Identifiers

DOI

10.7554/ELIFE.19274

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

4 June 2020

2722222

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2722222

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27801646%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

27801646

1 reference