(Q30497258)

19 October 2017

Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion (English)

1 reference

19 October 2017

1 reference

2

Jeffrey Skolnick

1 reference

19 October 2017

Tadashi Ando

1

1 reference

PMCID

2973006

19 October 2017

language of work or name

English

0 references

publication date

11 October 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

19 October 2017

1 reference

19 October 2017

107

1 reference

19 October 2017

18457-18462

1 reference

19 October 2017

43

1 reference

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

PSiFR: an integrated resource for prediction of protein structure and function.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

EFICAz2: enzyme function inference by a combined approach enhanced by machine learning

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Crowding effects on diffusion in solutions and cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Protein abundance profiling of the Escherichia coli cytosol

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

From in vivo to in silico biology and back

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Crowding and confinement effects on protein diffusion in vivo

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Fluorescence cross-correlation spectroscopy in living cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Automated structure prediction of weakly homologous proteins on a genomic scale

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Solute and macromolecule diffusion in cellular aqueous compartments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Macromolecular crowding: obvious but underappreciated

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Protein structure prediction and structural genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Calculation of hydrodynamic properties of globular proteins from their atomic-level structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

From genes to protein structure and function: novel applications of computational approaches in the genomic era.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area

20 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

20 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Hydrodynamic properties of rigid particles: comparison of different modeling and computational procedures

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Short-time motion of colloidal particles: Numerical simulation via a fluctuating lattice-Boltzmann equation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Protein mobility in the cytoplasm of Escherichia coli.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

The molecular structure of green fluorescent protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Macromolecular crowding: biochemical, biophysical, and physiological consequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973006

Single particle tracking of complex diffusion in membranes: simulation and detection of barrier, raft, and interaction phenomena

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Diffusion in cells measured by fluorescence recovery after photobleaching

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Static forces, structure and flow properties of complex fluids in highly confined geometries

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Comparison of structure-based and threading-based approaches to protein functional annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Dynamic simulation of hydrodynamically interacting particles

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Molecular characterisation of recombinant green fluorescent protein by fluorescence correlation microscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Nanotribology: friction, wear and lubrication at the atomic scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1011354107

Average hydrodynamic correction for the Brownian dynamics calculation of flocculation rates in concentrated dispersions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20937902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of anisotropy for protein-protein encounter

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20937902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Crowding effects on the structural transitions in a flexible helical homopolymer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20937902

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1011354107

1 reference

19 October 2017

0 references

1 reference

19 October 2017

1 reference

PMCID

2973006