(Q30326004)

18 June 2017

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title

From genes to protein structure and function: novel applications of computational approaches in the genomic era. (English)

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18 June 2017

main subject

computational biology

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Skolnick J

1

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18 June 2017

Fetrow JS

series ordinal

2

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18 June 2017

publication date

1 January 2000

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18 June 2017

published in

Trends in Biotechnology

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18 June 2017

volume

18

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18 June 2017

issue

1

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18 June 2017

page(s)

34-39

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

18 June 2017

1 reference

7 January 2021

X-SITE: use of empirically derived atomic packing preferences to identify favourable interaction regions in the binding sites of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Automated assembly of protein blocks for database searching

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Effective protein sequence comparison

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

The PROSITE database, its status in 1995.

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Protein family classification based on searching a database of blocks

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Novel developments with the PRINTS protein fingerprint database

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Highly specific protein sequence motifs for genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

A homology identification method that combines protein sequence and structure information

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Go hunting in sequence databases but watch out for the traps

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Structural genomics: bioinformatics in the driver's seat

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Genomics: structural and functional studies of genomes

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Structural genomics: keystone for a Human Proteome Project

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Functional analysis of the Escherichia coli genome for members of the alpha/beta hydrolase family

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Three-dimensional structure analysis of PROSITE patterns

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

The rational design and construction of a cuboidal iron-sulfur protein

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Construction of a catalytically active iron superoxide dismutase by rational protein design

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Construction of new ligand binding sites in proteins of known structure

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Construction of new ligand binding sites in proteins of known structure. II. Grafting of a buried transition metal binding site into Escherichia coli thioredoxin

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Characterization of Metal Binding by a Designed Protein: Single Ligand Substitutions at a Tetrahedral Cys2His2 Site

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Novel metal-binding proteins by design

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

The de novo design of a rubredoxin-like Fe site

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Recognition of spatial motifs in protein structures

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Protein structural similarities predicted by a sequence-structure compatibility method

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Characterizations of diverse residue clusters in protein three-dimensional structures

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Structure-based functional motif identifies a potential disulfide oxidoreductase active site in the serine/threonine protein phosphatase-1 subfamily

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Evaluation of comparative protein modeling by MODELLER

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Prediction of local structure in proteins using a library of sequence-structure motifs

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Structure prediction: The state of the art.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

A search for the most stable folds of protein chains

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

An empirical energy function for threading protein sequence through the folding motif

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Global optimum protein threading with gapped alignment and empirical pair score functions.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

A new approach to protein fold recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Progress in protein structure prediction: assessment of CASP3.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.

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https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Reduced protein models and their application to the protein folding problem

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Fold prediction by a hierarchy of sequence, threading, and modeling methods

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Locations of functional domains in the RecA protein. Overlap of domains and regulation of activities

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Structure of human rhinovirus 3C protease reveals a trypsin-like polypeptide fold, RNA-binding site, and means for cleaving precursor polyprotein

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Multifunctional proteins suggest connections between transcriptional and post-transcriptional processes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Three-dimensional structure of the catalytic subunit of protein serine/threonine phosphatase-1

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Protein serine/threonine phosphatases: structure, regulation, and functions in cell growth

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Reactivity of sulfhydryl groups of the catalytic subunits of rabbit skeletal muscle protein phosphatases 1 and 2A

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

CATH--a hierarchic classification of protein domain structures

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

Structural principles of alpha/beta barrel proteins: the packing of the interior of the sheet

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

The evolution of alpha/beta barrel enzymes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

1 reference

https://api.crossref.org/works/10.1016%2FS0167-7799%2899%2901398-0

7 January 2021

10.1016/S0167-7799(99)01398-0

Identifiers

DOI

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18 June 2017

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